This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2onq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:45, 30 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Gbeta1 stabilization by in vitro evolution and computational design==
==Gbeta1 stabilization by in vitro evolution and computational design==
-
<StructureSection load='2onq' size='340' side='right' caption='[[2onq]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
+
<StructureSection load='2onq' size='340' side='right'caption='[[2onq]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2onq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_sp._g148 Streptococcus sp. g148]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ONQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2onq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_sp._G148 Streptococcus sp. G148]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ONQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ONQ FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2on8|2on8]], [[1pga|1pga]], [[1gb4|1gb4]], [[1fcc|1fcc]], [[3gb1|3gb1]], [[1p7e|1p7e]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">spg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1324 Streptococcus sp. G148])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2onq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2onq OCA], [https://pdbe.org/2onq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2onq RCSB], [https://www.ebi.ac.uk/pdbsum/2onq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2onq ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2onq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2onq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2onq RCSB], [http://www.ebi.ac.uk/pdbsum/2onq PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SPG2_STRSG SPG2_STRSG]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/2onq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/on/2onq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2onq ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2onq" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
Line 32: Line 35:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Streptococcus sp. g148]]
+
[[Category: Large Structures]]
-
[[Category: Heinemann, U]]
+
[[Category: Streptococcus sp. G148]]
-
[[Category: Max, K E.A]]
+
[[Category: Heinemann U]]
-
[[Category: Alpha helix]]
+
[[Category: Max KEA]]
-
[[Category: Beta sheet]]
+
-
[[Category: Improved hydrophobic packing of core residue]]
+
-
[[Category: Protein binding]]
+

Current revision

Gbeta1 stabilization by in vitro evolution and computational design

PDB ID 2onq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2onq"
Personal tools