This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2otw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:48, 30 August 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2otw.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of Fv polyglutamine complex==
-
|PDB= 2otw |SIZE=350|CAPTION= <scene name='initialview01'>2otw</scene>, resolution 2.35&Aring;
+
<StructureSection load='2otw' size='340' side='right'caption='[[2otw]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2otw]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTW FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
|GENE= VL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus]), VH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otw OCA], [https://pdbe.org/2otw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otw RCSB], [https://www.ebi.ac.uk/pdbsum/2otw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otw ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=[[2gsg|2GSG]], [[2otu|2OTU]]
+
== Evolutionary Conservation ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otw OCA], [http://www.ebi.ac.uk/pdbsum/2otw PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2otw RCSB]</span>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
}}
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
'''Crystal structure of Fv polyglutamine complex'''
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otw_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2OTW is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTW OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otw ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Protein complex]]
+
[[Category: Li P]]
-
[[Category: Li, P.]]
+
-
[[Category: antibody]]
+
-
[[Category: complex]]
+
-
[[Category: polyglutamine]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:23:01 2008''
+

Current revision

Crystal structure of Fv polyglutamine complex

PDB ID 2otw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools