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2oya

From Proteopedia

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==Crystal structure analysis of the dimeric form of the SRCR domain of mouse MARCO==
==Crystal structure analysis of the dimeric form of the SRCR domain of mouse MARCO==
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<StructureSection load='2oya' size='340' side='right' caption='[[2oya]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
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<StructureSection load='2oya' size='340' side='right'caption='[[2oya]], [[Resolution|resolution]] 1.77&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2oya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OYA FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2oya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OYA FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.77&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2oy3|2oy3]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Marco ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oya OCA], [https://pdbe.org/2oya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oya RCSB], [https://www.ebi.ac.uk/pdbsum/2oya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oya ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oya OCA], [http://pdbe.org/2oya PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2oya RCSB], [http://www.ebi.ac.uk/pdbsum/2oya PDBsum]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/MARCO_MOUSE MARCO_MOUSE]] Pattern recognition receptor (PRR). Binds Gram-positive and Gram-negative bacteria.
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[https://www.uniprot.org/uniprot/MARCO_MOUSE MARCO_MOUSE] Pattern recognition receptor (PRR). Binds Gram-positive and Gram-negative bacteria.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oya_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oy/2oya_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oya ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Lk3 transgenic mice]]
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[[Category: Large Structures]]
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[[Category: Ojala, J R.M]]
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[[Category: Mus musculus]]
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[[Category: Pikkarainen, T]]
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[[Category: Ojala JRM]]
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[[Category: Sandalova, T]]
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[[Category: Pikkarainen T]]
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[[Category: Tryggvason, K]]
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[[Category: Sandalova T]]
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[[Category: Tuuttila, A]]
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[[Category: Tryggvason K]]
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[[Category: Acidic cluster]]
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[[Category: Tuuttila A]]
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[[Category: Basic cluster]]
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[[Category: Dimer]]
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[[Category: Extracellular matrix]]
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[[Category: Ligand binding]]
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[[Category: Ligand binding protein]]
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[[Category: Macrophage receptor]]
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[[Category: Sulfate binding]]
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Current revision

Crystal structure analysis of the dimeric form of the SRCR domain of mouse MARCO

PDB ID 2oya

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