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2oz3

From Proteopedia

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[[Image:2oz3.gif|left|200px]]
 
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{{Structure
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==Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii==
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|PDB= 2oz3 |SIZE=350|CAPTION= <scene name='initialview01'>2oz3</scene>, resolution 2.00&Aring;
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<StructureSection load='2oz3' size='340' side='right'caption='[[2oz3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=NA:SODIUM+ION'>NA</scene> and <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>
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<table><tr><td colspan='2'>[[2oz3]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii_DJ Azotobacter vinelandii DJ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OZ3 FirstGlance]. <br>
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|ACTIVITY= [http://en.wikipedia.org/wiki/L-rhamnonate_dehydratase L-rhamnonate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.90 4.2.1.90]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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|GENE= AVIN02004392, AvinDRAFT_6446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=322710 Azotobacter vinelandii AvOP])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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}}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oz3 OCA], [https://pdbe.org/2oz3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oz3 RCSB], [https://www.ebi.ac.uk/pdbsum/2oz3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oz3 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oz3 TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/C1DMY1_AZOVD C1DMY1_AZOVD] Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy-L-rhamnonate (KDR).[HAMAP-Rule:MF_01288]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oz/2oz3_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oz3 ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii'''
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==See Also==
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*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
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__TOC__
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==About this Structure==
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</StructureSection>
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2OZ3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Azotobacter_vinelandii_avop Azotobacter vinelandii avop]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OZ3 OCA].
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[[Category: Azotobacter vinelandii DJ]]
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[[Category: Azotobacter vinelandii avop]]
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[[Category: Large Structures]]
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[[Category: L-rhamnonate dehydratase]]
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[[Category: Almo SC]]
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[[Category: Single protein]]
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[[Category: Bain K]]
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[[Category: Almo, S C.]]
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[[Category: Burley SK]]
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[[Category: Bain, K.]]
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[[Category: Freeman JC]]
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[[Category: Burley, S K.]]
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[[Category: Gerlt J]]
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[[Category: Freeman, J C.]]
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[[Category: Gheyi T]]
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[[Category: Gerlt, J.]]
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[[Category: Patskovsky Y]]
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[[Category: Gheyi, T.]]
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[[Category: Sauder JM]]
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[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
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[[Category: Smith D]]
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[[Category: Patskovsky, Y.]]
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[[Category: Toro R]]
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[[Category: Sauder, J M.]]
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[[Category: Wasserman SR]]
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[[Category: Smith, D.]]
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[[Category: Wu B]]
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[[Category: Toro, R.]]
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[[Category: Wasserman, S R.]]
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[[Category: Wu, B.]]
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[[Category: GOL]]
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[[Category: NA]]
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[[Category: enolase]]
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[[Category: new york structural genomics research consortium]]
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[[Category: new york structural genomix research consortium]]
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[[Category: nysgrc]]
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[[Category: nysgxrc]]
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[[Category: protein structure initiative]]
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[[Category: psi]]
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[[Category: structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 18:06:27 2008''
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Current revision

Crystal structure of L-Rhamnonate dehydratase from Azotobacter vinelandii

PDB ID 2oz3

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