This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2p5y
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD== | ==Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD== | ||
| - | <StructureSection load='2p5y' size='340' side='right' caption='[[2p5y]], [[Resolution|resolution]] 1.92Å' scene=''> | + | <StructureSection load='2p5y' size='340' side='right'caption='[[2p5y]], [[Resolution|resolution]] 1.92Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2p5y]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2p5y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P5Y FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene></td></tr> | |
| - | <tr id=' | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p5y OCA], [https://pdbe.org/2p5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p5y RCSB], [https://www.ebi.ac.uk/pdbsum/2p5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p5y ProSAT], [https://www.topsan.org/Proteins/RSGI/2p5y TOPSAN]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q5SKQ2_THET8 Q5SKQ2_THET8] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5y_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p5/2p5y_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p5y ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| Line 23: | Line 25: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Thermus thermophilus HB8]] |
| - | [[Category: Chen | + | [[Category: Chen L]] |
| - | [[Category: Chrzas | + | [[Category: Chrzas J]] |
| - | [[Category: Ebihara | + | [[Category: Ebihara A]] |
| - | [[Category: Fu | + | [[Category: Fu Z-Q]] |
| - | [[Category: Kuramitsu | + | [[Category: Kuramitsu S]] |
| - | + | [[Category: Rose JP]] | |
| - | [[Category: Rose | + | [[Category: Shinkai A]] |
| - | [[Category: Shinkai | + | [[Category: Swindell JT]] |
| - | [[Category: Swindell | + | [[Category: Wang B-C]] |
| - | [[Category: Wang | + | [[Category: Yokoyama S]] |
| - | [[Category: Yokoyama | + | [[Category: Zhu J]] |
| - | [[Category: Zhu | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD
| |||||||||||
Categories: Large Structures | Thermus thermophilus HB8 | Chen L | Chrzas J | Ebihara A | Fu Z-Q | Kuramitsu S | Rose JP | Shinkai A | Swindell JT | Wang B-C | Yokoyama S | Zhu J
