This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pby

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2pby" [edit=sysop:move=sysop])
Current revision (10:58, 30 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Probable Glutaminase from Geobacillus kaustophilus HTA426==
==Probable Glutaminase from Geobacillus kaustophilus HTA426==
-
<StructureSection load='2pby' size='340' side='right' caption='[[2pby]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
+
<StructureSection load='2pby' size='340' side='right'caption='[[2pby]], [[Resolution|resolution]] 2.07&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2pby]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus Geobacillus kaustophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBY OCA]. <br>
+
<table><tr><td colspan='2'>[[2pby]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBY FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1mki|1mki]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.07&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GK2125 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1462 Geobacillus kaustophilus])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pby OCA], [https://pdbe.org/2pby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pby RCSB], [https://www.ebi.ac.uk/pdbsum/2pby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pby ProSAT], [https://www.topsan.org/Proteins/RSGI/2pby TOPSAN]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucokinase Glucokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.2 2.7.1.2] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pby OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2pby RCSB], [http://www.ebi.ac.uk/pdbsum/2pby PDBsum], [http://www.topsan.org/Proteins/RSGI/2pby TOPSAN]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/GLSA_GEOKA GLSA_GEOKA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pby_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pby_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pby ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
== References ==
+
 
-
<references/>
+
==See Also==
 +
*[[Glutaminase 3D structures|Glutaminase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Geobacillus kaustophilus]]
+
[[Category: Geobacillus kaustophilus HTA426]]
-
[[Category: Glutaminase]]
+
[[Category: Large Structures]]
-
[[Category: Dillard, B D.]]
+
[[Category: Dillard BD]]
-
[[Category: Ebihara, A.]]
+
[[Category: Ebihara A]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Kuramitsu S]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Rose JP]]
-
[[Category: Rose, J P.]]
+
[[Category: Shinkai A]]
-
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
+
[[Category: Wang B-C]]
-
[[Category: Shinkai, A.]]
+
[[Category: Yokoyama S]]
-
[[Category: Wang, B-C.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Glutaminase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Riken]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Secsg]]
+
-
[[Category: Southeast collaboratory for structural genomic]]
+
-
[[Category: Structural genomic]]
+

Current revision

Probable Glutaminase from Geobacillus kaustophilus HTA426

PDB ID 2pby

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools