This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2plu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:04, 30 August 2023) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2plu.gif|left|200px]]<br /><applet load="2plu" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2plu, resolution 1.820&Aring;" />
 
-
'''Crystal structure of Cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans isomerase cgd2_4120'''<br />
 
-
==About this Structure==
+
==Crystal structure of Cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans isomerase cgd2_4120==
-
2PLU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Cryptosporidium_parvum_iowa_ii Cryptosporidium parvum iowa ii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLU OCA].
+
<StructureSection load='2plu' size='340' side='right'caption='[[2plu]], [[Resolution|resolution]] 1.82&Aring;' scene=''>
-
[[Category: Cryptosporidium parvum iowa ii]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2plu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptosporidium_parvum_Iowa_II Cryptosporidium parvum Iowa II]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PLU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PLU FirstGlance]. <br>
-
[[Category: Arrowsmith, C H.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.82&#8491;</td></tr>
-
[[Category: Artz, J D.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2plu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2plu OCA], [https://pdbe.org/2plu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2plu RCSB], [https://www.ebi.ac.uk/pdbsum/2plu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2plu ProSAT]</span></td></tr>
-
[[Category: Bochkarev, A.]]
+
</table>
-
[[Category: Edwards, A M.]]
+
== Function ==
-
[[Category: Hassanali, A.]]
+
[https://www.uniprot.org/uniprot/A3FQA7_CRYPI A3FQA7_CRYPI] PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.[RuleBase:RU004223]
-
[[Category: Hills, T.]]
+
== Evolutionary Conservation ==
-
[[Category: Hui, R.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Kozieradzki, I.]]
+
Check<jmol>
-
[[Category: Lew, J.]]
+
<jmolCheckbox>
-
[[Category: Lin, Y H.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pl/2plu_consurf.spt"</scriptWhenChecked>
-
[[Category: SGC, Structural Genomics Consortium.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Schapira, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Sundstrom, M.]]
+
</jmolCheckbox>
-
[[Category: Weigelt, J.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2plu ConSurf].
-
[[Category: Wernimont, A K.]]
+
<div style="clear:both"></div>
-
[[Category: Xiao, T.]]
+
__TOC__
-
[[Category: Zhao, Y.]]
+
</StructureSection>
-
[[Category: cryptosporidium]]
+
[[Category: Cryptosporidium parvum Iowa II]]
-
[[Category: cyclophilin]]
+
[[Category: Large Structures]]
-
[[Category: malaria]]
+
[[Category: Arrowsmith CH]]
-
[[Category: sgc]]
+
[[Category: Artz JD]]
-
[[Category: structural genomics]]
+
[[Category: Bochkarev A]]
-
[[Category: structural genomics consortium]]
+
[[Category: Edwards AM]]
-
 
+
[[Category: Hassanali A]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:30:48 2008''
+
[[Category: Hills T]]
 +
[[Category: Hui R]]
 +
[[Category: Kozieradzki I]]
 +
[[Category: Lew J]]
 +
[[Category: Lin YH]]
 +
[[Category: Schapira M]]
 +
[[Category: Sundstrom M]]
 +
[[Category: Weigelt J]]
 +
[[Category: Wernimont AK]]
 +
[[Category: Xiao T]]
 +
[[Category: Zhao Y]]

Current revision

Crystal structure of Cryptosporidium parvum cyclophilin type peptidyl-prolyl cis-trans isomerase cgd2_4120

PDB ID 2plu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools