This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2ppg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:06, 30 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:2ppg.png|left|200px]]
 
-
<!--
+
==Crystal structure of putative isomerase from Sinorhizobium meliloti==
-
The line below this paragraph, containing "STRUCTURE_2ppg", creates the "Structure Box" on the page.
+
<StructureSection load='2ppg' size='340' side='right'caption='[[2ppg]], [[Resolution|resolution]] 2.49&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ppg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti_1021 Sinorhizobium meliloti 1021]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PPG FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.49&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2ppg| PDB=2ppg | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ppg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ppg OCA], [https://pdbe.org/2ppg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ppg RCSB], [https://www.ebi.ac.uk/pdbsum/2ppg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ppg ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ppg TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of putative isomerase from Sinorhizobium meliloti===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q92ZS5_RHIME Q92ZS5_RHIME]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2PPG is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PPG OCA].
+
Check<jmol>
-
[[Category: Sinorhizobium meliloti]]
+
<jmolCheckbox>
-
[[Category: Almo, S C.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pp/2ppg_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Dickey, M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Groshong, C.]]
+
</jmolCheckbox>
-
[[Category: Logan, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ppg ConSurf].
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
<div style="clear:both"></div>
-
[[Category: Ramagopal, U A.]]
+
__TOC__
-
[[Category: Sauder, J M.]]
+
</StructureSection>
-
[[Category: Toro, R.]]
+
[[Category: Large Structures]]
-
[[Category: Isomerase]]
+
[[Category: Sinorhizobium meliloti 1021]]
-
[[Category: New york structural genomix research consortium]]
+
[[Category: Almo SC]]
-
[[Category: Nysgxrc]]
+
[[Category: Burley SK]]
-
[[Category: Protein structure initiative]]
+
[[Category: Dickey M]]
-
[[Category: Psi-2]]
+
[[Category: Groshong C]]
-
[[Category: Structural genomic]]
+
[[Category: Logan C]]
-
 
+
[[Category: Ramagopal UA]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 15:47:37 2008''
+
[[Category: Sauder JM]]
 +
[[Category: Toro R]]

Current revision

Crystal structure of putative isomerase from Sinorhizobium meliloti

PDB ID 2ppg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools