2q9p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:26, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2q9p' size='340' side='right'caption='[[2q9p]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
<StructureSection load='2q9p' size='340' side='right'caption='[[2q9p]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2q9p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q9P OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2Q9P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2q9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Q9P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=F:FLUORIDE+ION'>F</scene>, <scene name='pdbligand=IHP:INOSITOL+HEXAKISPHOSPHATE'>IHP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2fvv|2fvv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=F:FLUORIDE+ION'>F</scene>, <scene name='pdbligand=IHP:INOSITOL+HEXAKISPHOSPHATE'>IHP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NUDT3, DIPP, DIPP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2q9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q9p OCA], [https://pdbe.org/2q9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2q9p RCSB], [https://www.ebi.ac.uk/pdbsum/2q9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2q9p ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Diphosphoinositol-polyphosphate_diphosphatase Diphosphoinositol-polyphosphate diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.52 3.6.1.52] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2q9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q9p OCA], [http://pdbe.org/2q9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2q9p RCSB], [http://www.ebi.ac.uk/pdbsum/2q9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2q9p ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/NUDT3_HUMAN NUDT3_HUMAN]] Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.<ref>PMID:9822604</ref>
+
[https://www.uniprot.org/uniprot/NUDT3_HUMAN NUDT3_HUMAN] Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.<ref>PMID:9822604</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 26: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Diphosphoinositol-polyphosphate diphosphatase]]
+
[[Category: Homo sapiens]]
-
[[Category: Human]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Berg, S Van den]]
+
[[Category: Berglund H]]
-
[[Category: Berglund, H]]
+
[[Category: Busam R]]
-
[[Category: Busam, R]]
+
[[Category: Collins R]]
-
[[Category: Collins, R]]
+
[[Category: Dahlgren LG]]
-
[[Category: Dahlgren, L G]]
+
[[Category: Edwards A]]
-
[[Category: Edwards, A]]
+
[[Category: Flodin S]]
-
[[Category: Flodin, S]]
+
[[Category: Flores A]]
-
[[Category: Flores, A]]
+
[[Category: Graslund S]]
-
[[Category: Graslund, S]]
+
[[Category: Hallberg BM]]
-
[[Category: Hallberg, B M]]
+
[[Category: Hammarstrom M]]
-
[[Category: Hammarstrom, M]]
+
[[Category: Holmberg-Schiavone L]]
-
[[Category: Holmberg-Schiavone, L]]
+
[[Category: Johansson I]]
-
[[Category: Johansson, I]]
+
[[Category: Kallas A]]
-
[[Category: Kallas, A]]
+
[[Category: Karlberg T]]
-
[[Category: Karlberg, T]]
+
[[Category: Kotenyova T]]
-
[[Category: Kotenyova, T]]
+
[[Category: Lehtio L]]
-
[[Category: Lehtio, L]]
+
[[Category: Moche M]]
-
[[Category: Moche, M]]
+
[[Category: Nordlund P]]
-
[[Category: Nordlund, P]]
+
[[Category: Nyman T]]
-
[[Category: Nyman, T]]
+
[[Category: Ogg D]]
-
[[Category: Ogg, D]]
+
[[Category: Persson C]]
-
[[Category: Persson, C]]
+
[[Category: Sagemark J]]
-
[[Category: Structural genomic]]
+
[[Category: Sundstrom M]]
-
[[Category: Sagemark, J]]
+
[[Category: Thorsell AG]]
-
[[Category: Sundstrom, M]]
+
[[Category: Van den Berg S]]
-
[[Category: Thorsell, A G]]
+
[[Category: Weigelt J]]
-
[[Category: Weigelt, J]]
+
[[Category: Welin M]]
-
[[Category: Welin, M]]
+
-
[[Category: Diphosphoinositol polyphosphate phosphohydrolase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Inositol pyrophosphate metabolism]]
+
-
[[Category: Nudix]]
+
-
[[Category: Sgc]]
+

Current revision

Human diphosphoinositol polyphosphate phosphohydrolase 1, Mg-F complex

PDB ID 2q9p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools