This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qkr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:35, 30 August 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qkr.jpg|left|200px]]
 
-
{{Structure
+
==Cryptosporidium parvum cyclin-dependent kinase cgd5_2510 with indirubin 3'-monoxime bound==
-
|PDB= 2qkr |SIZE=350|CAPTION= <scene name='initialview01'>2qkr</scene>, resolution 2.600&Aring;
+
<StructureSection load='2qkr' size='340' side='right'caption='[[2qkr]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=IXM:(Z)-1H,1&#39;H-[2,3&#39;]BIINDOLYLIDENE-3,2&#39;-DIONE-3-OXIME'>IXM</scene>
+
<table><tr><td colspan='2'>[[2qkr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cryptosporidium_parvum_Iowa_II Cryptosporidium parvum Iowa II]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QKR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QKR FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Cyclin-dependent_kinase Cyclin-dependent kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.22 2.7.11.22] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
|GENE= cgd5_2510 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=353152 Cryptosporidium parvum Iowa II])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IXM:(Z)-1H,1H-[2,3]BIINDOLYLIDENE-3,2-DIONE-3-OXIME'>IXM</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qkr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qkr OCA], [https://pdbe.org/2qkr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qkr RCSB], [https://www.ebi.ac.uk/pdbsum/2qkr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qkr ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2qkr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qkr OCA], [http://www.ebi.ac.uk/pdbsum/2qkr PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2qkr RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q5CRJ8_CRYPI Q5CRJ8_CRYPI]
-
 
+
== Evolutionary Conservation ==
-
'''Cryptosporidium parvum cyclin-dependent kinase cgd5_2510 with indirubin 3'-monoxime bound'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qk/2qkr_consurf.spt"</scriptWhenChecked>
-
2QKR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Cryptosporidium_parvum_iowa_ii Cryptosporidium parvum iowa ii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QKR OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Cryptosporidium parvum iowa ii]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Cyclin-dependent kinase]]
+
</jmolCheckbox>
-
[[Category: Single protein]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qkr ConSurf].
-
[[Category: Arrowsmith, C H.]]
+
<div style="clear:both"></div>
-
[[Category: Artz, J D.]]
+
__TOC__
-
[[Category: Bochkarev, A.]]
+
</StructureSection>
-
[[Category: Dong, A.]]
+
[[Category: Cryptosporidium parvum Iowa II]]
-
[[Category: Edwards, A M.]]
+
[[Category: Large Structures]]
-
[[Category: Hassanali, A.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Hui, R.]]
+
[[Category: Artz JD]]
-
[[Category: Lew, J.]]
+
[[Category: Bochkarev A]]
-
[[Category: Lin, Y H.]]
+
[[Category: Dong A]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Edwards AM]]
-
[[Category: Sundstrom, M.]]
+
[[Category: Hassanali A]]
-
[[Category: Weigelt, J.]]
+
[[Category: Hui R]]
-
[[Category: Wernimont, A K.]]
+
[[Category: Lew J]]
-
[[Category: cp-specific cyclin-dependent kinase]]
+
[[Category: Lin YH]]
-
[[Category: cryptosporidium parvum]]
+
[[Category: Sundstrom M]]
-
[[Category: malaria]]
+
[[Category: Weigelt J]]
-
[[Category: sgc]]
+
[[Category: Wernimont AK]]
-
[[Category: structural genomic]]
+
-
[[Category: structural genomics consortium]]
+
-
[[Category: transferase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:50:24 2008''
+

Current revision

Cryptosporidium parvum cyclin-dependent kinase cgd5_2510 with indirubin 3'-monoxime bound

PDB ID 2qkr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools