This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qvh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2qvh" [edit=sysop:move=sysop])
Current revision (11:41, 30 August 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qvh.png|left|200px]]
 
-
{{STRUCTURE_2qvh| PDB=2qvh | SCENE= }}
+
==Crystal structure of O-succinylbenzoate synthase complexed with O-succinyl benzoate (OSB)==
-
 
+
<StructureSection load='2qvh' size='340' side='right'caption='[[2qvh]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
-
===Crystal structure of O-succinylbenzoate synthase complexed with O-succinyl benzoate (OSB)===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2qvh]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermobifida_fusca_YX Thermobifida fusca YX]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QVH FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.76&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=OSB:2-SUCCINYLBENZOATE'>OSB</scene></td></tr>
-
[[2qvh]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermobifida_fusca_yx Thermobifida fusca yx]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVH OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qvh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qvh OCA], [https://pdbe.org/2qvh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qvh RCSB], [https://www.ebi.ac.uk/pdbsum/2qvh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qvh ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2qvh TOPSAN]</span></td></tr>
-
[[Category: Thermobifida fusca yx]]
+
</table>
-
[[Category: Burley, S K.]]
+
== Function ==
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[https://www.uniprot.org/uniprot/MENC_THEFY MENC_THEFY] Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 2-succinylbenzoate (OSB) (PubMed:24060347, PubMed:24872444). Does not show N-succinylamino acid racemase (NSAR) activity with N-succinyl-L-phenylglycine as substrate (PubMed:24872444).<ref>PMID:24060347</ref> <ref>PMID:24872444</ref>
-
[[Category: Sugadev, R.]]
+
== Evolutionary Conservation ==
-
[[Category: Swaminathan, S.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: 9312b]]
+
Check<jmol>
-
[[Category: Lyase]]
+
<jmolCheckbox>
-
[[Category: New york sgx research center for structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qv/2qvh_consurf.spt"</scriptWhenChecked>
-
[[Category: Nysgxrc]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: O-succinylbenzoate]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Protein structure initiative]]
+
</jmolCheckbox>
-
[[Category: Psi-ii]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qvh ConSurf].
-
[[Category: Structural genomic]]
+
<div style="clear:both"></div>
-
[[Category: Tim barrel]]
+
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermobifida fusca YX]]
 +
[[Category: Burley SK]]
 +
[[Category: Sugadev R]]
 +
[[Category: Swaminathan S]]

Current revision

Crystal structure of O-succinylbenzoate synthase complexed with O-succinyl benzoate (OSB)

PDB ID 2qvh

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools