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2qvv

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(New page: 200px<br /><applet load="2qvv" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qvv, resolution 2.030&Aring;" /> '''Porcine Liver Fruct...)
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[[Image:2qvv.jpg|left|200px]]<br /><applet load="2qvv" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2qvv, resolution 2.030&Aring;" />
 
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'''Porcine Liver Fructose-1,6-bisphosphatase cocrystallized with Fru-2,6-P2 and Zn2+, I(T)-state'''<br />
 
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==Overview==
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==Porcine Liver Fructose-1,6-bisphosphatase cocrystallized with Fru-2,6-P2 and Zn2+, I(T)-state==
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Fructose-1,6-bisphosphatase (FBPase) operates at a control point in, mammalian gluconeogenesis, being inhibited synergistically by fructose, 2,6-bisphosphate (Fru-2,6-P(2)) and AMP. AMP and Fru-2,6-P(2) bind to, allosteric and active sites, respectively, but the mechanism responsible, for AMP/Fru-2,6-P(2) synergy is unclear. Demonstrated here for the first, time is a global conformational change in porcine FBPase induced by, Fru-2,6-P(2) in the absence of AMP. The Fru-2,6-P(2) complex exhibits a, subunit-pair rotation of 13 degrees from the R-state (compared to the 15, degrees rotation of the T-state AMP complex) with active-site loops in the, disengaged conformation. A three-state thermodynamic model in which, Fru-2,6-P(2) drives a conformational change to a T-like intermediate state, can account for AMP/Fru-2,6-P(2) synergism in mammalian FBPases. AMP and, Fru-2,6-P(2) are not synergistic inhibitors of the Type I FBPase from, Escherichia coli, and consistent with that model, the complex of E. coli, FBPase with Fru-2,6-P(2) remains in the R-state with dynamic loops in the, engaged conformation. Evidently in porcine FBPase, the actions of AMP at, the allosteric site and Fru-2,6-P(2) at the active site displace engaged, dynamic loops by distinct mechanisms, resulting in similar quaternary, end-states. Conceivably, Type I FBPases from all eukaryotes may undergo, similar global conformational changes in response to Fru-2,6-P(2), ligation.
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<StructureSection load='2qvv' size='340' side='right'caption='[[2qvv]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2qvv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QVV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FDP:FRUCTOSE-2,6-DIPHOSPHATE'>FDP</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qvv OCA], [https://pdbe.org/2qvv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qvv RCSB], [https://www.ebi.ac.uk/pdbsum/2qvv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qvv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/F16P1_PIG F16P1_PIG]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qv/2qvv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qvv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Fructose-1,6-bisphosphatase (FBPase) operates at a control point in mammalian gluconeogenesis, being inhibited synergistically by fructose 2,6-bisphosphate (Fru-2,6-P(2)) and AMP. AMP and Fru-2,6-P(2) bind to allosteric and active sites, respectively, but the mechanism responsible for AMP/Fru-2,6-P(2) synergy is unclear. Demonstrated here for the first time is a global conformational change in porcine FBPase induced by Fru-2,6-P(2) in the absence of AMP. The Fru-2,6-P(2) complex exhibits a subunit pair rotation of 13 degrees from the R-state (compared with the 15 degrees rotation of the T-state AMP complex) with active site loops in the disengaged conformation. A three-state thermodynamic model in which Fru-2,6-P(2) drives a conformational change to a T-like intermediate state can account for AMP/Fru-2,6-P(2) synergism in mammalian FBPases. AMP and Fru-2,6-P(2) are not synergistic inhibitors of the Type I FBPase from Escherichia coli, and consistent with that model, the complex of E. coli FBPase with Fru-2,6-P(2) remains in the R-state with dynamic loops in the engaged conformation. Evidently in porcine FBPase, the actions of AMP at the allosteric site and Fru-2,6-P(2) at the active site displace engaged dynamic loops by distinct mechanisms, resulting in similar quaternary end-states. Conceivably, Type I FBPases from all eukaryotes may undergo similar global conformational changes in response to Fru-2,6-P(2) ligation.
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==About this Structure==
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Structures of mammalian and bacterial fructose-1,6-bisphosphatase reveal the basis for synergism in AMP/fructose 2,6-bisphosphate inhibition.,Hines JK, Chen X, Nix JC, Fromm HJ, Honzatko RB J Biol Chem. 2007 Dec 7;282(49):36121-31. Epub 2007 Oct 12. PMID:17933867<ref>PMID:17933867</ref>
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2QVV is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa] with <scene name='pdbligand=FDP:'>FDP</scene>, <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Fructose-bisphosphatase Fructose-bisphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.11 3.1.3.11] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QVV OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structures of mammalian and bacterial fructose-1,6-bisphosphatase reveal the basis for synergism in AMP/fructose 2,6-bisphosphate inhibition., Hines JK, Chen X, Nix JC, Fromm HJ, Honzatko RB, J Biol Chem. 2007 Oct 12;. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17933867 17933867]
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</div>
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[[Category: Fructose-bisphosphatase]]
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<div class="pdbe-citations 2qvv" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Sus scrofa]]
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[[Category: Chen, X.]]
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[[Category: Fromm, H.J.]]
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[[Category: Hines, J.K.]]
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[[Category: Honzatko, R.B.]]
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[[Category: Nix, J.C.]]
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[[Category: FDP]]
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[[Category: PO4]]
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[[Category: ZN]]
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[[Category: homotetramer; sugar phosphatase fold]]
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[[Category: hydrolase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 11:03:47 2008''
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==See Also==
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*[[Fructose-1%2C6-bisphosphatase 3D structures|Fructose-1%2C6-bisphosphatase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Sus scrofa]]
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[[Category: Chen X]]
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[[Category: Fromm HJ]]
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[[Category: Hines JK]]
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[[Category: Honzatko RB]]
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[[Category: Nix JC]]

Current revision

Porcine Liver Fructose-1,6-bisphosphatase cocrystallized with Fru-2,6-P2 and Zn2+, I(T)-state

PDB ID 2qvv

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