This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3b5m
From Proteopedia
(Difference between revisions)
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | {{Seed}} | ||
| - | [[Image:3b5m.png|left|200px]] | ||
| - | + | ==Crystal structure of conserved uncharacterized protein from Rhodopirellula baltica== | |
| - | + | <StructureSection load='3b5m' size='340' side='right'caption='[[3b5m]], [[Resolution|resolution]] 1.21Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3b5m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopirellula_baltica_SH_1 Rhodopirellula baltica SH 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B5M FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.21Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b5m OCA], [https://pdbe.org/3b5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b5m RCSB], [https://www.ebi.ac.uk/pdbsum/3b5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b5m ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b5m TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q7UTD8_RHOBA Q7UTD8_RHOBA] | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | [[ | + | <jmolCheckbox> |
| - | [[ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b5/3b5m_consurf.spt"</scriptWhenChecked> |
| - | [[ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [[ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[ | + | </jmolCheckbox> |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b5m ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | [ | + | __TOC__ |
| - | [[ | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Rhodopirellula baltica SH 1]] |
| - | [[Category: | + | [[Category: Almo SC]] |
| - | [[Category: | + | [[Category: Bonanno JB]] |
| - | [[Category: | + | [[Category: Burley SK]] |
| - | [[Category: | + | [[Category: Maletic M]] |
| - | [[Category: | + | [[Category: Patskovsky Y]] |
| - | [[Category: | + | [[Category: Powell A]] |
| - | [[Category: | + | [[Category: Rodgers R]] |
| - | [[Category: | + | [[Category: Rutter M]] |
| - | [[Category: | + | [[Category: Sauder JM]] |
| - | [[Category: | + | [[Category: Smith D]] |
| - | [[Category: | + | [[Category: Sridhar V]] |
| - | + | [[Category: Wasserman S]] | |
| - | + | ||
Current revision
Crystal structure of conserved uncharacterized protein from Rhodopirellula baltica
| |||||||||||
Categories: Large Structures | Rhodopirellula baltica SH 1 | Almo SC | Bonanno JB | Burley SK | Maletic M | Patskovsky Y | Powell A | Rodgers R | Rutter M | Sauder JM | Smith D | Sridhar V | Wasserman S

