3b9z

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[[Image:3b9z.jpg|left|200px]]
 
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==Crystal structure of the Nitrosomonas europaea Rh protein complexed with carbon dioxide==
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The line below this paragraph, containing "STRUCTURE_3b9z", creates the "Structure Box" on the page.
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<StructureSection load='3b9z' size='340' side='right'caption='[[3b9z]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3b9z]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nitrosomonas_europaea_ATCC_19718 Nitrosomonas europaea ATCC 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B9Z OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B9Z FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BOG:B-OCTYLGLUCOSIDE'>BOG</scene>, <scene name='pdbligand=CO2:CARBON+DIOXIDE'>CO2</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr>
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{{STRUCTURE_3b9z| PDB=3b9z | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b9z OCA], [https://pdbe.org/3b9z PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b9z RCSB], [https://www.ebi.ac.uk/pdbsum/3b9z PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b9z ProSAT]</span></td></tr>
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</table>
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'''Crystal structure of the Nitrosomonas europaea Rh protein complexed with carbon dioxide'''
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== Function ==
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[https://www.uniprot.org/uniprot/Q82X47_NITEU Q82X47_NITEU]
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== Evolutionary Conservation ==
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==Overview==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b9/3b9z_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b9z ConSurf].
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<div style="clear:both"></div>
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== Publication Abstract from PubMed ==
Amt/MEP/Rh proteins are a family of integral membrane proteins implicated in the transport of NH3, CH(2)NH2, and CO2. Whereas Amt/MEP proteins are agreed to transport ammonia (NH3/NH4+), the primary substrate for Rh proteins has been controversial. Initial studies suggested that Rh proteins also transport ammonia, but more recent evidence suggests that they transport CO2. Here we report the first structure of an Rh family member, the Rh protein from the chemolithoautotrophic ammonia-oxidizing bacterium Nitrosomonas europaea. This Rh protein exhibits a number of similarities to its Amt cousins, including a trimeric oligomeric state, a central pore with an unusual twin-His site in the middle, and a Phe residue that blocks the channel for small-molecule transport. However, there are some significant differences, the most notable being the presence of an additional cytoplasmic C-terminal alpha-helix, an increased number of internal proline residues along the transmembrane helices, and a specific set of residues that appear to link the C-terminal helix to Phe blockage. This latter linkage suggests a mechanism in which binding of a partner protein to the C terminus could regulate channel opening. Another difference is the absence of the extracellular pi-cation binding site conserved in Amt/Mep structures. Instead, CO2 pressurization experiments identify a CO2 binding site near the intracellular exit of the channel whose residues are highly conserved in all Rh proteins, except those belonging to the Rh30 subfamily. The implications of these findings on the functional role of the human Rh antigens are discussed.
Amt/MEP/Rh proteins are a family of integral membrane proteins implicated in the transport of NH3, CH(2)NH2, and CO2. Whereas Amt/MEP proteins are agreed to transport ammonia (NH3/NH4+), the primary substrate for Rh proteins has been controversial. Initial studies suggested that Rh proteins also transport ammonia, but more recent evidence suggests that they transport CO2. Here we report the first structure of an Rh family member, the Rh protein from the chemolithoautotrophic ammonia-oxidizing bacterium Nitrosomonas europaea. This Rh protein exhibits a number of similarities to its Amt cousins, including a trimeric oligomeric state, a central pore with an unusual twin-His site in the middle, and a Phe residue that blocks the channel for small-molecule transport. However, there are some significant differences, the most notable being the presence of an additional cytoplasmic C-terminal alpha-helix, an increased number of internal proline residues along the transmembrane helices, and a specific set of residues that appear to link the C-terminal helix to Phe blockage. This latter linkage suggests a mechanism in which binding of a partner protein to the C terminus could regulate channel opening. Another difference is the absence of the extracellular pi-cation binding site conserved in Amt/Mep structures. Instead, CO2 pressurization experiments identify a CO2 binding site near the intracellular exit of the channel whose residues are highly conserved in all Rh proteins, except those belonging to the Rh30 subfamily. The implications of these findings on the functional role of the human Rh antigens are discussed.
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==About this Structure==
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Structure of the Nitrosomonas europaea Rh protein.,Li X, Jayachandran S, Nguyen HH, Chan MK Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19279-84. Epub 2007 Nov 26. PMID:18040042<ref>PMID:18040042</ref>
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3B9Z is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Nitrosomonas_europaea_atcc_19718 Nitrosomonas europaea atcc 19718]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B9Z OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure of the Nitrosomonas europaea Rh protein., Li X, Jayachandran S, Nguyen HH, Chan MK, Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19279-84. Epub 2007 Nov 26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18040042 18040042]
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</div>
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[[Category: Nitrosomonas europaea atcc 19718]]
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<div class="pdbe-citations 3b9z" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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[[Category: Chan, M K.]]
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<references/>
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[[Category: Jayachandran, S.]]
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__TOC__
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[[Category: Li, X.]]
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</StructureSection>
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[[Category: Nguyen, H-H T.]]
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[[Category: Large Structures]]
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[[Category: Carbon dioxide]]
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[[Category: Nitrosomonas europaea ATCC 19718]]
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[[Category: Channel]]
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[[Category: Chan MK]]
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[[Category: Co2]]
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[[Category: Jayachandran S]]
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[[Category: Rh protein]]
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[[Category: Li X]]
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[[Category: Transport protein]]
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[[Category: Nguyen H-HT]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 20:33:55 2008''
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Crystal structure of the Nitrosomonas europaea Rh protein complexed with carbon dioxide

PDB ID 3b9z

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