This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bar

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:05, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3bar' size='340' side='right'caption='[[3bar]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='3bar' size='340' side='right'caption='[[3bar]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3bar]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plaf7 Plaf7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BAR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3bar]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BAR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BAR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=U5P:URIDINE-5-MONOPHOSPHATE'>U5P</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2q8l|2q8l]], [[2q8z|2q8z]], [[2qaf|2qaf]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=U5P:URIDINE-5-MONOPHOSPHATE'>U5P</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ompdc ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36329 PLAF7])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Orotidine-5'-phosphate_decarboxylase Orotidine-5'-phosphate decarboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.23 4.1.1.23] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bar OCA], [https://pdbe.org/3bar PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bar RCSB], [https://www.ebi.ac.uk/pdbsum/3bar PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bar ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bar OCA], [https://pdbe.org/3bar PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bar RCSB], [https://www.ebi.ac.uk/pdbsum/3bar PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bar ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8IJH3_PLAF7 Q8IJH3_PLAF7]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 34: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Orotidine-5'-phosphate decarboxylase]]
+
[[Category: Plasmodium falciparum 3D7]]
-
[[Category: Plaf7]]
+
[[Category: Bello AM]]
-
[[Category: Bello, A M]]
+
[[Category: Kotra LP]]
-
[[Category: Kotra, L P]]
+
[[Category: Lau W]]
-
[[Category: Lau, W]]
+
[[Category: Liu Y]]
-
[[Category: Liu, Y]]
+
[[Category: Pai EF]]
-
[[Category: Pai, E F]]
+
[[Category: Poduch E]]
-
[[Category: Poduch, E]]
+
-
[[Category: 6-azido-ump]]
+
-
[[Category: Covalently]]
+
-
[[Category: Lyase]]
+
-
[[Category: Orotidine 5'-phosphate decarboxylase]]
+
-
[[Category: Plasmodium falciparum]]
+
-
[[Category: Pyrimidine biosynthesis]]
+

Current revision

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase covalently modified by 6-azido-UMP

PDB ID 3bar

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bar"
Personal tools