This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bpd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:11, 30 August 2023) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bpd.jpg|left|200px]]
 
-
{{Structure
+
==Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus==
-
|PDB= 3bpd |SIZE=350|CAPTION= <scene name='initialview01'>3bpd</scene>, resolution 2.8&Aring;
+
<StructureSection load='3bpd' size='340' side='right'caption='[[3bpd]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
+
<table><tr><td colspan='2'>[[3bpd]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BPD FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
|GENE= AF_1549 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 Archaeoglobus fulgidus DSM 4304])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bpd OCA], [https://pdbe.org/3bpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bpd RCSB], [https://www.ebi.ac.uk/pdbsum/3bpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bpd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bpd TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/O28723_ARCFU O28723_ARCFU]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3BPD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPD OCA].
+
Check<jmol>
-
[[Category: Archaeoglobus fulgidus dsm 4304]]
+
<jmolCheckbox>
-
[[Category: Single protein]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/3bpd_consurf.spt"</scriptWhenChecked>
-
[[Category: Burley, S K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Eswaramoorthy, S.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
</jmolCheckbox>
-
[[Category: Sauder, J M.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bpd ConSurf].
-
[[Category: Swaminathan, S.]]
+
<div style="clear:both"></div>
-
[[Category: MG]]
+
__TOC__
-
[[Category: 10197b]]
+
</StructureSection>
-
[[Category: heptamer]]
+
[[Category: Archaeoglobus fulgidus DSM 4304]]
-
[[Category: mg+2 ion]]
+
[[Category: Large Structures]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Burley SK]]
-
[[Category: nysgxrc]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: protein structure initiative]]
+
[[Category: Sauder JM]]
-
[[Category: psi-2]]
+
[[Category: Swaminathan S]]
-
[[Category: structural genomic]]
+
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 19:00:26 2008''
+

Current revision

Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus

PDB ID 3bpd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools