This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3bpd
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3bpd.jpg|left|200px]] | ||
| - | + | ==Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus== | |
| - | + | <StructureSection load='3bpd' size='340' side='right'caption='[[3bpd]], [[Resolution|resolution]] 2.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[3bpd]] is a 14 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BPD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BPD FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bpd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bpd OCA], [https://pdbe.org/3bpd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bpd RCSB], [https://www.ebi.ac.uk/pdbsum/3bpd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bpd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3bpd TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/O28723_ARCFU O28723_ARCFU] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | == | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/3bpd_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [[Category: Archaeoglobus fulgidus | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Burley | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bpd ConSurf]. |
| - | [[Category: Eswaramoorthy | + | <div style="clear:both"></div> |
| - | + | __TOC__ | |
| - | [[Category: Sauder | + | </StructureSection> |
| - | [[Category: Swaminathan | + | [[Category: Archaeoglobus fulgidus DSM 4304]] |
| - | + | [[Category: Large Structures]] | |
| - | + | [[Category: Burley SK]] | |
| - | + | [[Category: Eswaramoorthy S]] | |
| - | + | [[Category: Sauder JM]] | |
| - | + | [[Category: Swaminathan S]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of an uncharacterized protein (O28723_ARCFU) from Archaeoglobus fulgidus
| |||||||||||
