3cc6

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(New page: 200px<br /><applet load="3cc6" size="350" color="white" frame="true" align="right" spinBox="true" caption="3cc6, resolution 1.600&Aring;" /> '''Crystal structure o...)
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[[Image:3cc6.jpg|left|200px]]<br /><applet load="3cc6" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="3cc6, resolution 1.600&Aring;" />
 
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'''Crystal structure of kinase domain of protein tyrosine kinase 2 beta (PTK2B)'''<br />
 
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==About this Structure==
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==Crystal structure of kinase domain of protein tyrosine kinase 2 beta (PTK2B)==
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3CC6 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Non-specific_protein-tyrosine_kinase Non-specific protein-tyrosine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.10.2 2.7.10.2] Known structural/functional Sites: <scene name='pdbsite=AC1:Mg+Binding+Site+For+Residue+A+701'>AC1</scene> and <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+702'>AC2</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CC6 OCA].
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<StructureSection load='3cc6' size='340' side='right'caption='[[3cc6]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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[[Category: Homo sapiens]]
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== Structural highlights ==
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[[Category: Non-specific protein-tyrosine kinase]]
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<table><tr><td colspan='2'>[[3cc6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CC6 FirstGlance]. <br>
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[[Category: Single protein]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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[[Category: Arrowsmith, C H.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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[[Category: Berg, S Van den.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cc6 OCA], [https://pdbe.org/3cc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cc6 RCSB], [https://www.ebi.ac.uk/pdbsum/3cc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cc6 ProSAT]</span></td></tr>
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[[Category: Berglund, H.]]
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</table>
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[[Category: Bountra, C.]]
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== Disease ==
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[[Category: Busam, R D.]]
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[https://www.uniprot.org/uniprot/FAK2_HUMAN FAK2_HUMAN] Note=Aberrant PTK2B/PYK2 expression may play a role in cancer cell proliferation, migration and invasion, in tumor formation and metastasis. Elevated PTK2B/PYK2 expression is seen in gliomas, hepatocellular carcinoma, lung cancer and breast cancer.<ref>PMID:18339875</ref> <ref>PMID:18765415</ref> <ref>PMID:19648005</ref> <ref>PMID:21533080</ref> <ref>PMID:20001213</ref> <ref>PMID:19428251</ref> <ref>PMID:19244237</ref>
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[[Category: Collins, R.]]
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== Function ==
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[[Category: Dahlgren, L G.]]
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[https://www.uniprot.org/uniprot/FAK2_HUMAN FAK2_HUMAN] Non-receptor protein-tyrosine kinase that regulates reorganization of the actin cytoskeleton, cell polarization, cell migration, adhesion, spreading and bone remodeling. Plays a role in the regulation of the humoral immune response, and is required for normal levels of marginal B-cells in the spleen and normal migration of splenic B-cells. Required for normal macrophage polarization and migration towards sites of inflammation. Regulates cytoskeleton rearrangement and cell spreading in T-cells, and contributes to the regulation of T-cell responses. Promotes osteoclastic bone resorption; this requires both PTK2B/PYK2 and SRC. May inhibit differentiation and activity of osteoprogenitor cells. Functions in signaling downstream of integrin and collagen receptors, immune receptors, G-protein coupled receptors (GPCR), cytokine, chemokine and growth factor receptors, and mediates responses to cellular stress. Forms multisubunit signaling complexes with SRC and SRC family members upon activation; this leads to the phosphorylation of additional tyrosine residues, creating binding sites for scaffold proteins, effectors and substrates. Regulates numerous signaling pathways. Promotes activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Promotes activation of NOS3. Regulates production of the cellular messenger cGMP. Promotes activation of the MAP kinase signaling cascade, including activation of MAPK1/ERK2, MAPK3/ERK1 and MAPK8/JNK1. Promotes activation of Rho family GTPases, such as RHOA and RAC1. Recruits the ubiquitin ligase MDM2 to P53/TP53 in the nucleus, and thereby regulates P53/TP53 activity, P53/TP53 ubiquitination and proteasomal degradation. Acts as a scaffold, binding to both PDPK1 and SRC, thereby allowing SRC to phosphorylate PDPK1 at 'Tyr-9, 'Tyr-373', and 'Tyr-376'. Promotes phosphorylation of NMDA receptors by SRC family members, and thereby contributes to the regulation of NMDA receptor ion channel activity and intracellular Ca(2+) levels. May also regulate potassium ion transport by phosphorylation of potassium channel subunits. Phosphorylates SRC; this increases SRC kinase activity. Phosphorylates ASAP1, NPHP1, KCNA2 and SHC1. Promotes phosphorylation of ASAP2, RHOU and PXN; this requires both SRC and PTK2/PYK2.<ref>PMID:7544443</ref> <ref>PMID:8849729</ref> <ref>PMID:8670418</ref> <ref>PMID:10022920</ref> <ref>PMID:12771146</ref> <ref>PMID:12893833</ref> <ref>PMID:14585963</ref> <ref>PMID:15050747</ref> <ref>PMID:15166227</ref> <ref>PMID:17634955</ref> <ref>PMID:18339875</ref> <ref>PMID:18765415</ref> <ref>PMID:18086875</ref> <ref>PMID:18587400</ref> <ref>PMID:19207108</ref> <ref>PMID:19648005</ref> <ref>PMID:19086031</ref> <ref>PMID:20521079</ref> <ref>PMID:19880522</ref> <ref>PMID:20381867</ref> <ref>PMID:21357692</ref> <ref>PMID:21533080</ref> <ref>PMID:20001213</ref> <ref>PMID:19428251</ref> <ref>PMID:19244237</ref>
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[[Category: Edwards, A M.]]
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== Evolutionary Conservation ==
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[[Category: Flodin, S.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Flores, A.]]
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Check<jmol>
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[[Category: Graslund, S.]]
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<jmolCheckbox>
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[[Category: Hammarstrom, M.]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cc/3cc6_consurf.spt"</scriptWhenChecked>
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[[Category: Helleday, T.]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Herman, M D.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Johansson, A.]]
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</jmolCheckbox>
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[[Category: Johansson, I.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cc6 ConSurf].
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[[Category: Kallas, A.]]
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<div style="clear:both"></div>
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[[Category: Karlberg, T.]]
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[[Category: Kotenyova, T.]]
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[[Category: Lehtio, L.]]
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[[Category: Moche, M.]]
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[[Category: Nilsson, M E.]]
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[[Category: Nordlund, P.]]
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[[Category: Nyman, T.]]
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[[Category: Persson, C.]]
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[[Category: SGC, Structural Genomics Consortium.]]
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[[Category: Sagemark, J.]]
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[[Category: Svensson, L.]]
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[[Category: Thorsell, A G.]]
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[[Category: Tresaugues, L.]]
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[[Category: Weigelt, J.]]
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[[Category: Welin, M.]]
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[[Category: GOL]]
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[[Category: MG]]
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[[Category: alternative splicing]]
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[[Category: atp-binding]]
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[[Category: cytoplasm]]
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[[Category: focal adhesion kinase]]
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[[Category: membrane]]
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[[Category: nucleotide-binding]]
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[[Category: phosphoprotein]]
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[[Category: polymorphism]]
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[[Category: sgc]]
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[[Category: structural genomic]]
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[[Category: structural genomics consortium]]
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[[Category: transferase]]
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[[Category: tyrosine-protein kinase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Fri Mar 14 09:40:54 2008''
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==See Also==
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*[[Tyrosine kinase 3D structures|Tyrosine kinase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Arrowsmith CH]]
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[[Category: Berglund H]]
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[[Category: Bountra C]]
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[[Category: Busam RD]]
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[[Category: Collins R]]
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[[Category: Dahlgren LG]]
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[[Category: Edwards AM]]
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[[Category: Flodin S]]
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[[Category: Flores A]]
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[[Category: Graslund S]]
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[[Category: Hammarstrom M]]
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[[Category: Helleday T]]
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[[Category: Herman MD]]
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[[Category: Johansson A]]
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[[Category: Johansson I]]
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[[Category: Kallas A]]
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[[Category: Karlberg T]]
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[[Category: Kotenyova T]]
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[[Category: Lehtio L]]
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[[Category: Moche M]]
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[[Category: Nilsson ME]]
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[[Category: Nordlund P]]
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[[Category: Nyman T]]
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[[Category: Persson C]]
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[[Category: Sagemark J]]
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[[Category: Svensson L]]
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[[Category: Thorsell AG]]
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[[Category: Tresaugues L]]
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[[Category: Van den Berg S]]
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[[Category: Weigelt J]]
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[[Category: Welin M]]

Current revision

Crystal structure of kinase domain of protein tyrosine kinase 2 beta (PTK2B)

PDB ID 3cc6

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