This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cyn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:35, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==The structure of human GPX8==
==The structure of human GPX8==
-
<StructureSection load='3cyn' size='340' side='right' caption='[[3cyn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3cyn' size='340' side='right'caption='[[3cyn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LOC493869 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_peroxidase Glutathione peroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.9 1.11.1.9] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [https://pdbe.org/3cyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [https://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [http://pdbe.org/3cyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [http://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GPX8_HUMAN GPX8_HUMAN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 20:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
 +
==See Also==
 +
*[[Glutathione peroxidase|Glutathione peroxidase]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Glutathione peroxidase]]
+
[[Category: Homo sapiens]]
-
[[Category: Human]]
+
[[Category: Large Structures]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Bountra, C]]
+
[[Category: Bountra C]]
-
[[Category: Delft, F von]]
+
[[Category: Edwards AM]]
-
[[Category: Edwards, A M]]
+
[[Category: Filippakopoulos P]]
-
[[Category: Filippakopoulos, P]]
+
[[Category: Johansson C]]
-
[[Category: Johansson, C]]
+
[[Category: Kavanagh KL]]
-
[[Category: Kavanagh, K L]]
+
[[Category: Kochan G]]
-
[[Category: Kochan, G]]
+
[[Category: Murray J]]
-
[[Category: Murray, J]]
+
[[Category: Oppermann U]]
-
[[Category: Oppermann, U]]
+
[[Category: Pike ACW]]
-
[[Category: Pike, A C.W]]
+
[[Category: Roos AK]]
-
[[Category: Roos, A K]]
+
[[Category: Wikstrom M]]
-
[[Category: Structural genomic]]
+
[[Category: Yue WW]]
-
[[Category: Wikstrom, M]]
+
[[Category: Von Delft F]]
-
[[Category: Yue, W W]]
+
-
[[Category: Membrane]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Sgc]]
+
-
[[Category: Thioredoxin fold]]
+
-
[[Category: Transmembrane]]
+

Current revision

The structure of human GPX8

PDB ID 3cyn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools