This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dr6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:51, 30 August 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3dr6.png|left|200px]]
 
-
<!--
+
==Structure of yncA, a putative ACETYLTRANSFERASE from Salmonella typhimurium==
-
The line below this paragraph, containing "STRUCTURE_3dr6", creates the "Structure Box" on the page.
+
<StructureSection load='3dr6' size='340' side='right'caption='[[3dr6]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3dr6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DR6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DR6 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3dr6| PDB=3dr6 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dr6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dr6 OCA], [https://pdbe.org/3dr6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dr6 RCSB], [https://www.ebi.ac.uk/pdbsum/3dr6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dr6 ProSAT], [https://www.topsan.org/Proteins/CSGID/3dr6 TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Structure of yncA, a putative acteyltransferase from Salmonella typhimurium===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/MDDA_SALTY MDDA_SALTY] Plays a role in the resistance against the toxic effects of L-methionine sulfoximine (MSX), a rare amino acid which inhibits glutamine synthetase (GlnA). Catalyzes the acetylation of MSX. It can also use L-methionine sulfone (MSO) (PubMed:25368301). Also catalyzes the acylation of free L-amino acids using an acyl-CoA as acyl donor (By similarity).[UniProtKB:P76112]<ref>PMID:25368301</ref>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3DR6 is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Salmonella_typhimurium Salmonella typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DR6 OCA].
+
Check<jmol>
-
[[Category: Salmonella typhimurium]]
+
<jmolCheckbox>
-
[[Category: Anderson, W F.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dr/3dr6_consurf.spt"</scriptWhenChecked>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Edwards, A M.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Onopriyenko, O.]]
+
</jmolCheckbox>
-
[[Category: Savchenko, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dr6 ConSurf].
-
[[Category: Singer, A U.]]
+
<div style="clear:both"></div>
-
[[Category: Skarina, T.]]
+
== References ==
-
[[Category: Acetyltransferase]]
+
<references/>
-
[[Category: Center for structural genomics of infectious disease]]
+
__TOC__
-
[[Category: Csgid target]]
+
</StructureSection>
-
[[Category: Essential gene]]
+
[[Category: Large Structures]]
-
[[Category: Idp00086]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]]
-
[[Category: Salmonella typhimurium]]
+
[[Category: Anderson WF]]
-
[[Category: Structural genomic]]
+
[[Category: Edwards AM]]
-
 
+
[[Category: Onopriyenko O]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 16:25:34 2009''
+
[[Category: Savchenko A]]
 +
[[Category: Singer AU]]
 +
[[Category: Skarina T]]

Current revision

Structure of yncA, a putative ACETYLTRANSFERASE from Salmonella typhimurium

PDB ID 3dr6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dr6"
Personal tools