This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ds7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:52, 30 August 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Structure of an RNA-2'-deoxyguanosine complex==
==Structure of an RNA-2'-deoxyguanosine complex==
-
<StructureSection load='3ds7' size='340' side='right' caption='[[3ds7]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='3ds7' size='340' side='right'caption='[[3ds7]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ds7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DS7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DS7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ds7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DS7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DS7 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GNG:2-DEOXY-GUANOSINE'>GNG</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ds7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ds7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ds7 RCSB], [http://www.ebi.ac.uk/pdbsum/3ds7 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GNG:2-DEOXY-GUANOSINE'>GNG</scene>, <scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene></td></tr>
-
<table>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ds7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ds7 OCA], [https://pdbe.org/3ds7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ds7 RCSB], [https://www.ebi.ac.uk/pdbsum/3ds7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ds7 ProSAT]</span></td></tr>
 +
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 12: Line 14:
A structural basis for the recognition of 2'-deoxyguanosine by the purine riboswitch.,Edwards AL, Batey RT J Mol Biol. 2009 Jan 23;385(3):938-48. Epub 2008 Nov 5. PMID:19007790<ref>PMID:19007790</ref>
A structural basis for the recognition of 2'-deoxyguanosine by the purine riboswitch.,Edwards AL, Batey RT J Mol Biol. 2009 Jan 23;385(3):938-48. Epub 2008 Nov 5. PMID:19007790<ref>PMID:19007790</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3ds7" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Batey, R T.]]
+
[[Category: Large Structures]]
-
[[Category: Edwards, A L.]]
+
[[Category: Synthetic construct]]
-
[[Category: Riboswitch]]
+
[[Category: Batey RT]]
-
[[Category: Rna]]
+
[[Category: Edwards AL]]
-
[[Category: Rna-ligand complex]]
+

Current revision

Structure of an RNA-2'-deoxyguanosine complex

PDB ID 3ds7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools