This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dzo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:55, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of a rhoptry kinase from toxoplasma gondii==
==Crystal structure of a rhoptry kinase from toxoplasma gondii==
-
<StructureSection load='3dzo' size='340' side='right' caption='[[3dzo]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3dzo' size='340' side='right'caption='[[3dzo]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dzo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Toxgo Toxgo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DZO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dzo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3byv|3byv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">33.m001398 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5811 TOXGO])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzo OCA], [https://pdbe.org/3dzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzo RCSB], [https://www.ebi.ac.uk/pdbsum/3dzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzo ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzo OCA], [http://pdbe.org/3dzo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3dzo RCSB], [http://www.ebi.ac.uk/pdbsum/3dzo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzo ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q06AK3_TOXGO Q06AK3_TOXGO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzo_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzo_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Toxgo]]
+
[[Category: Large Structures]]
-
[[Category: Ali, A]]
+
[[Category: Toxoplasma gondii]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Ali A]]
-
[[Category: Bochkarev, A]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Bountra, C]]
+
[[Category: Bochkarev A]]
-
[[Category: Edwards, A M]]
+
[[Category: Bountra C]]
-
[[Category: Hui, R]]
+
[[Category: Edwards AM]]
-
[[Category: Kozieradzki, I]]
+
[[Category: Hui R]]
-
[[Category: Lam, A]]
+
[[Category: Kozieradzki I]]
-
[[Category: Lin, Y H]]
+
[[Category: Lam A]]
-
[[Category: Ni, S]]
+
[[Category: Lin YH]]
-
[[Category: Qiu, W]]
+
[[Category: Ni S]]
-
[[Category: Ravichandran, M]]
+
[[Category: Qiu W]]
-
[[Category: Structural genomic]]
+
[[Category: Ravichandran M]]
-
[[Category: Schapira, M]]
+
[[Category: Schapira M]]
-
[[Category: Sibley, D]]
+
[[Category: Sibley D]]
-
[[Category: Vedadi, M]]
+
[[Category: Vedadi M]]
-
[[Category: Wasney, G]]
+
[[Category: Wasney G]]
-
[[Category: Wernimont, A K]]
+
[[Category: Wernimont AK]]
-
[[Category: Wilkstrom, M]]
+
[[Category: Wilkstrom M]]
-
[[Category: Parasitic disease]]
+
-
[[Category: Rhoptry kinase]]
+
-
[[Category: Sgc]]
+
-
[[Category: Toxoplasma]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of a rhoptry kinase from toxoplasma gondii

PDB ID 3dzo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools