This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ekg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:07, 30 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==CRYSTAL STRUCTURE OF L-RHAMNONATE DEHYDRATASE FROM AZOTOBACTER VINELANDII complexed with Mg and L-TARTRATE==
==CRYSTAL STRUCTURE OF L-RHAMNONATE DEHYDRATASE FROM AZOTOBACTER VINELANDII complexed with Mg and L-TARTRATE==
-
<StructureSection load='3ekg' size='340' side='right' caption='[[3ekg]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='3ekg' size='340' side='right'caption='[[3ekg]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ekg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Azovd Azovd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EKG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ekg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Azotobacter_vinelandii_DJ Azotobacter vinelandii DJ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EKG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2oz3|2oz3]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ekg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ekg OCA], [https://pdbe.org/3ekg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ekg RCSB], [https://www.ebi.ac.uk/pdbsum/3ekg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ekg ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AvinDRAFT_6446 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=322710 AZOVD])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ekg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ekg OCA], [http://pdbe.org/3ekg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ekg RCSB], [http://www.ebi.ac.uk/pdbsum/3ekg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ekg ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C1DMY1_AZOVD C1DMY1_AZOVD] Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy-L-rhamnonate (KDR).[HAMAP-Rule:MF_01288]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 22: Line 22:
==See Also==
==See Also==
-
*[[Mandelate racemase/muconate lactonizing enzyme|Mandelate racemase/muconate lactonizing enzyme]]
+
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Azovd]]
+
[[Category: Azotobacter vinelandii DJ]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Fedorov, A A]]
+
[[Category: Burley SK]]
-
[[Category: Fedorov, E V]]
+
[[Category: Fedorov AA]]
-
[[Category: Gerlt, J A]]
+
[[Category: Fedorov EV]]
-
[[Category: Structural genomic]]
+
[[Category: Gerlt JA]]
-
[[Category: Sauder, J M]]
+
[[Category: Sauder JM]]
-
[[Category: L-rhamnonate dehydratase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Target 9265m]]
+

Current revision

CRYSTAL STRUCTURE OF L-RHAMNONATE DEHYDRATASE FROM AZOTOBACTER VINELANDII complexed with Mg and L-TARTRATE

PDB ID 3ekg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools