This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5iib

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:53, 30 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)==
==Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)==
-
<StructureSection load='5iib' size='340' side='right' caption='[[5iib]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
+
<StructureSection load='5iib' size='340' side='right'caption='[[5iib]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5iib]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IIB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IIB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5iib]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haliotis_rufescens Haliotis rufescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IIB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lis|1lis]], [[2lis|2lis]], [[1lyn|1lyn]], [[2lyn|2lyn]], [[3d4c|3d4c]], [[3d4g|3d4g]], [[3ef7|3ef7]], [[3nk3|3nk3]], [[3nk4|3nk4]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iib OCA], [http://pdbe.org/5iib PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iib RCSB], [http://www.ebi.ac.uk/pdbsum/5iib PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5iib ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5iib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iib OCA], [https://pdbe.org/5iib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5iib RCSB], [https://www.ebi.ac.uk/pdbsum/5iib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5iib ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU]] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
+
[https://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 21:
==See Also==
==See Also==
-
*[[Lysin|Lysin]]
+
*[[Lysin 3D structures|Lysin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Al-Hosseini, H Sadat]]
+
[[Category: Haliotis rufescens]]
-
[[Category: Jovine, L]]
+
[[Category: Large Structures]]
-
[[Category: Nishimura, K]]
+
[[Category: De Sanctis D]]
-
[[Category: Raj, I]]
+
[[Category: Jovine L]]
-
[[Category: Sanctis, D De]]
+
[[Category: Nishimura K]]
-
[[Category: Cell adhesion]]
+
[[Category: Raj I]]
-
[[Category: Egg coat]]
+
[[Category: Sadat Al-Hosseini H]]
-
[[Category: Egg coat penetration]]
+
-
[[Category: Egg-sperm interaction]]
+
-
[[Category: Fertilization]]
+
-
[[Category: Gamete recognition]]
+
-
[[Category: Sperm acrosome]]
+
-
[[Category: Sperm receptor]]
+
-
[[Category: Vitelline envelope]]
+
-
[[Category: Zp domain]]
+
-
[[Category: Zp-n domain]]
+

Current revision

Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)

PDB ID 5iib

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5iib"
Personal tools