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5iib

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Current revision (13:53, 30 August 2023) (edit) (undo)
 
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==Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)==
==Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)==
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<StructureSection load='5iib' size='340' side='right' caption='[[5iib]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
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<StructureSection load='5iib' size='340' side='right'caption='[[5iib]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5iib]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/California_red_abalone California red abalone]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IIB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IIB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5iib]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Haliotis_rufescens Haliotis rufescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IIB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IIB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lis|1lis]], [[2lis|2lis]], [[1lyn|1lyn]], [[2lyn|2lyn]], [[3d4c|3d4c]], [[3d4g|3d4g]], [[3ef7|3ef7]], [[3nk3|3nk3]], [[3nk4|3nk4]], [[5ii7|5ii7]], [[5ii8|5ii8]], [[5ii9|5ii9]], [[5ii5|5ii5]], [[5ii4|5ii4]], [[5iic|5iic]], [[5iia|5iia]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VERL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6454 California red abalone])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5iib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iib OCA], [https://pdbe.org/5iib PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5iib RCSB], [https://www.ebi.ac.uk/pdbsum/5iib PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5iib ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5iib FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5iib OCA], [http://pdbe.org/5iib PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5iib RCSB], [http://www.ebi.ac.uk/pdbsum/5iib PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5iib ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU]] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
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[https://www.uniprot.org/uniprot/ELYS_HALRU ELYS_HALRU] Dissolves the egg vitelline layer nonenzymatically during fertilization. It creates a hole of about 3 mu-m in diameter through which the sperm pass.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5iib" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5iib" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Lysin 3D structures|Lysin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: California red abalone]]
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[[Category: Haliotis rufescens]]
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[[Category: Al-Hosseini, H Sadat]]
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[[Category: Large Structures]]
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[[Category: Jovine, L]]
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[[Category: De Sanctis D]]
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[[Category: Nishimura, K]]
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[[Category: Jovine L]]
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[[Category: Raj, I]]
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[[Category: Nishimura K]]
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[[Category: Sanctis, D De]]
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[[Category: Raj I]]
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[[Category: Cell adhesion]]
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[[Category: Sadat Al-Hosseini H]]
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[[Category: Egg coat]]
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[[Category: Egg coat penetration]]
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[[Category: Egg-sperm interaction]]
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[[Category: Fertilization]]
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[[Category: Gamete recognition]]
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[[Category: Sperm acrosome]]
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[[Category: Sperm receptor]]
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[[Category: Vitelline envelope]]
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[[Category: Zp domain]]
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[[Category: Zp-n domain]]
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Current revision

Crystal structure of red abalone egg VERL repeat 3 in complex with sperm lysin at 1.64 A resolution (crystal form II)

PDB ID 5iib

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