This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ior

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:03, 30 August 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Flavin-dependent thymidylate synthase in complex with FAD and 2'-deoxyuridine-5'-monosulfate==
==Flavin-dependent thymidylate synthase in complex with FAD and 2'-deoxyuridine-5'-monosulfate==
-
<StructureSection load='5ior' size='340' side='right' caption='[[5ior]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+
<StructureSection load='5ior' size='340' side='right'caption='[[5ior]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ior]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IOR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5IOR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ior]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IOR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IOR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DUS:2-DEOXY-5-O-SULFOURIDINE'>DUS</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ioq|5ioq]], [[5ios|5ios]], [[5iot|5iot]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUS:2-DEOXY-5-O-SULFOURIDINE'>DUS</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=RBF:RIBOFLAVIN'>RBF</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Thymidylate_synthase_(FAD) Thymidylate synthase (FAD)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.148 2.1.1.148] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ior FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ior OCA], [https://pdbe.org/5ior PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ior RCSB], [https://www.ebi.ac.uk/pdbsum/5ior PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ior ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ior FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ior OCA], [http://pdbe.org/5ior PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ior RCSB], [http://www.ebi.ac.uk/pdbsum/5ior PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/THYX_THEMA THYX_THEMA]] Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate.
+
[https://www.uniprot.org/uniprot/THYX_THEMA THYX_THEMA] Catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 5ior" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ior" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Thymidylate synthase 3D structures|Thymidylate synthase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bernard, S M]]
+
[[Category: Large Structures]]
-
[[Category: Smith, J L]]
+
[[Category: Thermotoga maritima MSB8]]
-
[[Category: Stull, F W]]
+
[[Category: Bernard SM]]
-
[[Category: Fad-dependent]]
+
[[Category: Smith JL]]
-
[[Category: Nucleotide biosynthesis]]
+
[[Category: Stull FW]]
-
[[Category: Reductive methylation]]
+
-
[[Category: Transferase]]
+

Current revision

Flavin-dependent thymidylate synthase in complex with FAD and 2'-deoxyuridine-5'-monosulfate

PDB ID 5ior

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools