This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3f2v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:41, 6 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3f2v.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the general stress protein 14 (TDE0354) in complex with FMN from Treponema denticola, Northeast Structural Genomics Consortium Target TdR58.==
-
The line below this paragraph, containing "STRUCTURE_3f2v", creates the "Structure Box" on the page.
+
<StructureSection load='3f2v' size='340' side='right'caption='[[3f2v]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3f2v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Treponema_denticola Treponema denticola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F2V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F2V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-
{{STRUCTURE_3f2v| PDB=3f2v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f2v OCA], [https://pdbe.org/3f2v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f2v RCSB], [https://www.ebi.ac.uk/pdbsum/3f2v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f2v ProSAT], [https://www.topsan.org/Proteins/NESGC/3f2v TOPSAN]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of the general stress protein 14 (TDE0354) in complex with FMN from Treponema denticola, Northeast Structural Genomics Consortium Target TdR58.===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q73QT9_TREDE Q73QT9_TREDE]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
3F2V is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Treponema_denticola Treponema denticola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F2V OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f2/3f2v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f2v ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Treponema denticola]]
[[Category: Treponema denticola]]
-
[[Category: Acton, T B.]]
+
[[Category: Acton TB]]
-
[[Category: Belote, R L.]]
+
[[Category: Belote RL]]
-
[[Category: Ciccosanti, C.]]
+
[[Category: Ciccosanti C]]
-
[[Category: Everett, J K.]]
+
[[Category: Everett JK]]
-
[[Category: Foote, E L.]]
+
[[Category: Foote EL]]
-
[[Category: Forouhar, F.]]
+
[[Category: Forouhar F]]
-
[[Category: Hunt, J F.]]
+
[[Category: Hunt JF]]
-
[[Category: Janjua, H.]]
+
[[Category: Janjua H]]
-
[[Category: Lew, S.]]
+
[[Category: Lew S]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione GT]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Nair R]]
-
[[Category: Nair, R.]]
+
[[Category: Rost B]]
-
[[Category: Rost, B.]]
+
[[Category: Sahdev S]]
-
[[Category: Sahdev, S.]]
+
[[Category: Seetharaman J]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Tong L]]
-
[[Category: Tong, L.]]
+
[[Category: Xiao R]]
-
[[Category: Xiao, R.]]
+
-
[[Category: Alpha-beta protein.]]
+
-
[[Category: Nesg]]
+
-
[[Category: Northeast structural genomics consortium]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Nov 20 07:48:59 2008''
+

Current revision

Crystal structure of the general stress protein 14 (TDE0354) in complex with FMN from Treponema denticola, Northeast Structural Genomics Consortium Target TdR58.

PDB ID 3f2v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3f2v"
Personal tools