This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3fyu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:54, 6 September 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3fyu.png|left|200px]]
 
-
{{STRUCTURE_3fyu| PDB=3fyu | SCENE= }}
+
==Crystal structure of acetyl xylan esterase from Bacillus pumilus obtained in presence of D-xylose and sodium acetate==
-
 
+
<StructureSection load='3fyu' size='340' side='right'caption='[[3fyu]], [[Resolution|resolution]] 2.62&Aring;' scene=''>
-
===Crystal structure of acetyl xylan esterase from Bacillus pumilus obtained in presence of D-xylose and sodium acetate===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3fyu]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_pumilus Bacillus pumilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FYU FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.62&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=OAS:O-ACETYLSERINE'>OAS</scene>, <scene name='pdbligand=TIS:O-(1,1-DIHYDROXYETHYL)-L-SERINE'>TIS</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
-
[[3fyu]] is a 12 chain structure of [[Acetylxylan esterase]] with sequence from [http://en.wikipedia.org/wiki/Bacillus_pumilus Bacillus pumilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYU OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fyu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fyu OCA], [https://pdbe.org/3fyu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fyu RCSB], [https://www.ebi.ac.uk/pdbsum/3fyu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fyu ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9K5F2_BACPU Q9K5F2_BACPU]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/3fyu_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fyu ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Acetylxylan esterase|Acetylxylan esterase]]
+
*[[Acetylxylan esterase 3D structures|Acetylxylan esterase 3D structures]]
-
[[Category: Acetylesterase]]
+
__TOC__
-
[[Category: Bacillus pumilus]]
+
</StructureSection>
-
[[Category: Cassetta, A.]]
+
-
[[Category: Krastanova, I.]]
+
-
[[Category: Lamba, D.]]
+
-
[[Category: Alpha/beta hydrolase]]
+
[[Category: Bacillus pumilus]]
[[Category: Bacillus pumilus]]
-
[[Category: Carbohydrate esterase]]
+
[[Category: Large Structures]]
-
[[Category: Ce7]]
+
[[Category: Cassetta A]]
-
[[Category: Hydrolase]]
+
[[Category: Krastanova I]]
 +
[[Category: Lamba D]]

Current revision

Crystal structure of acetyl xylan esterase from Bacillus pumilus obtained in presence of D-xylose and sodium acetate

PDB ID 3fyu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools