This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gdm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:03, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the K93R mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae==
==Crystal structure of the K93R mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae==
-
<StructureSection load='3gdm' size='340' side='right' caption='[[3gdm]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='3gdm' size='340' side='right'caption='[[3gdm]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gdm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GDM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gdm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GDM FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gdk|3gdk]], [[3gdl|3gdl]], [[3gdr|3gdr]], [[3gdt|3gdt]], [[1dqw|1dqw]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">URA3, YEL021W ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdm OCA], [https://pdbe.org/3gdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gdm RCSB], [https://www.ebi.ac.uk/pdbsum/3gdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gdm ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Orotidine-5'-phosphate_decarboxylase Orotidine-5'-phosphate decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.23 4.1.1.23] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gdm OCA], [http://pdbe.org/3gdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gdm RCSB], [http://www.ebi.ac.uk/pdbsum/3gdm PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PYRF_YEAST PYRF_YEAST]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdm_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/3gdm_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 21:
==See Also==
==See Also==
-
*[[Uridine 5'-monophosphate synthase|Uridine 5'-monophosphate synthase]]
+
*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 18824]]
+
[[Category: Large Structures]]
-
[[Category: Orotidine-5'-phosphate decarboxylase]]
+
-
[[Category: Almo, S C]]
+
-
[[Category: Fedorov, A A]]
+
-
[[Category: Fedorov, E V]]
+
-
[[Category: Gerlt, J A]]
+
-
[[Category: Wood, B M]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: K93r mutant]]
+
-
[[Category: Lyase]]
+
-
[[Category: Orotidine 5'-monophosphate decarboxylase]]
+
-
[[Category: Phosphoprotein]]
+
-
[[Category: Pyrimidine biosynthesis]]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
 +
[[Category: Almo SC]]
 +
[[Category: Fedorov AA]]
 +
[[Category: Fedorov EV]]
 +
[[Category: Gerlt JA]]
 +
[[Category: Wood BM]]

Current revision

Crystal structure of the K93R mutant of the orotidine 5'-monophosphate decarboxylase from Saccharomyces cerevisiae

PDB ID 3gdm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3gdm"
Personal tools