This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gos

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:09, 6 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3gos.png|left|200px]]
 
-
{{STRUCTURE_3gos| PDB=3gos | SCENE= }}
+
==The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92==
-
 
+
<StructureSection load='3gos' size='340' side='right'caption='[[3gos]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3gos]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GOS FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[3gos]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GOS OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gos FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gos OCA], [https://pdbe.org/3gos PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gos RCSB], [https://www.ebi.ac.uk/pdbsum/3gos PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gos ProSAT], [https://www.topsan.org/Proteins/CSGID/3gos TOPSAN]</span></td></tr>
-
[[Category: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase]]
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DAPD_YERPE DAPD_YERPE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/go/3gos_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gos ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Yersinia pestis]]
[[Category: Yersinia pestis]]
-
[[Category: Anderson, W.]]
+
[[Category: Anderson W]]
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Kwon K]]
-
[[Category: Kwon, K.]]
+
[[Category: Maltseva N]]
-
[[Category: Maltseva, N.]]
+
[[Category: Zhang R]]
-
[[Category: Zhang, R.]]
+
-
[[Category: 5-tetrahydropyridine-2-carboxylate n-succinyltransferase]]
+
-
[[Category: Acyltransferase]]
+
-
[[Category: Amino-acid biosynthesis]]
+
-
[[Category: Center for structural genomics of infectious disease]]
+
-
[[Category: Csgid]]
+
-
[[Category: Diaminopimelate biosynthesis]]
+
-
[[Category: Lysine biosynthesis]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+

Current revision

The crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase from Yersinia pestis CO92

PDB ID 3gos

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools