This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3h07

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:14, 6 September 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:3h07.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase from Yersinia pestis CO92==
-
The line below this paragraph, containing "STRUCTURE_3h07", creates the "Structure Box" on the page.
+
<StructureSection load='3h07' size='340' side='right'caption='[[3h07]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3h07]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H07 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H07 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h07 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h07 OCA], [https://pdbe.org/3h07 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h07 RCSB], [https://www.ebi.ac.uk/pdbsum/3h07 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h07 ProSAT], [https://www.topsan.org/Proteins/CSGID/3h07 TOPSAN]</span></td></tr>
-
{{STRUCTURE_3h07| PDB=3h07 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase from Yersinia pestis CO92===
+
[https://www.uniprot.org/uniprot/RIBB_YERPE RIBB_YERPE] Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate (By similarity).
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
3H07 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H07 OCA].
+
<jmolCheckbox>
-
[[Category: 3,4-dihydroxy-2-butanone-4-phosphate synthase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h0/3h07_consurf.spt"</scriptWhenChecked>
-
[[Category: Yersinia pestis]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Anderson, W F.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
+
</jmolCheckbox>
-
[[Category: Csgid]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h07 ConSurf].
-
[[Category: Gu, M.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A]]
+
__TOC__
-
[[Category: Kwon, K.]]
+
</StructureSection>
-
[[Category: Nocek, B.]]
+
[[Category: Large Structures]]
-
[[Category: 4-dihydroxy-2-butanone 4-phosphate synthase]]
+
[[Category: Yersinia pestis CO92]]
-
[[Category: Biosynthesis of coenzyme]]
+
[[Category: Anderson WF]]
-
[[Category: Center for structural genomics of infectious disease]]
+
[[Category: Gu M]]
-
[[Category: Csgid]]
+
[[Category: Joachimiak A]]
-
[[Category: Lyase]]
+
[[Category: Kwon K]]
-
[[Category: Magnesium]]
+
[[Category: Nocek B]]
-
[[Category: Manganese]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: National institute of allergy and infectious disease]]
+
-
[[Category: Ribb]]
+
-
[[Category: Riboflavin biosynthesis]]
+
-
[[Category: Structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 6 11:34:04 2009''
+

Current revision

Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase from Yersinia pestis CO92

PDB ID 3h07

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools