This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hog

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:25, 6 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3hog.png|left|200px]]
 
-
{{STRUCTURE_3hog| PDB=3hog | SCENE= }}
+
==Metal-free Tomato Chloroplast Superoxide Dismutase==
-
 
+
<StructureSection load='3hog' size='340' side='right'caption='[[3hog]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
-
===Metal-free Tomato Chloroplast Superoxide Dismutase===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3hog]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HOG FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-
[[3hog]] is a 1 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HOG OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hog OCA], [https://pdbe.org/3hog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hog RCSB], [https://www.ebi.ac.uk/pdbsum/3hog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hog ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SODCP_SOLLC SODCP_SOLLC] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ho/3hog_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hog ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Superoxide Dismutase|Superoxide Dismutase]]
+
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Solanum lycopersicum]]
[[Category: Solanum lycopersicum]]
-
[[Category: Superoxide dismutase]]
+
[[Category: Galaleldeen A]]
-
[[Category: Galaleldeen, A.]]
+
[[Category: Hart PJ]]
-
[[Category: Hart, P J.]]
+
[[Category: Taylor AB]]
-
[[Category: Taylor, A B.]]
+
-
[[Category: Antioxidant]]
+
-
[[Category: Chloroplast]]
+
-
[[Category: Disulfide bond]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Tomato cu]]
+
-
[[Category: Transit peptide]]
+
-
[[Category: Zn superoxide dismutase]]
+

Current revision

Metal-free Tomato Chloroplast Superoxide Dismutase

PDB ID 3hog

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools