This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ij5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:48, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3ij5' size='340' side='right'caption='[[3ij5]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
<StructureSection load='3ij5' size='340' side='right'caption='[[3ij5]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ij5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IJ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IJ5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ij5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IJ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IJ5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">kdsC, NP_407035, y0150, YPO3578, YP_3833 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/3-deoxy-manno-octulosonate-8-phosphatase 3-deoxy-manno-octulosonate-8-phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.45 3.1.3.45] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ij5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ij5 OCA], [https://pdbe.org/3ij5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ij5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ij5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ij5 ProSAT], [https://www.topsan.org/Proteins/CSGID/3ij5 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ij5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ij5 OCA], [https://pdbe.org/3ij5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ij5 RCSB], [https://www.ebi.ac.uk/pdbsum/3ij5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ij5 ProSAT], [https://www.topsan.org/Proteins/CSGID/3ij5 TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/KDSC_YERPE KDSC_YERPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-deoxy-manno-octulosonate-8-phosphatase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Yersinia pestis co92]]
+
[[Category: Yersinia pestis CO92]]
-
[[Category: Anderson, W F]]
+
[[Category: Anderson WF]]
-
[[Category: Structural genomic]]
+
[[Category: Dubrovska I]]
-
[[Category: Dubrovska, I]]
+
[[Category: Halavaty A]]
-
[[Category: Halavaty, A]]
+
[[Category: Minasov G]]
-
[[Category: Minasov, G]]
+
[[Category: Papazisi L]]
-
[[Category: Papazisi, L]]
+
[[Category: Shuvalova L]]
-
[[Category: Shuvalova, L]]
+
[[Category: Winsor J]]
-
[[Category: Winsor, J]]
+
-
[[Category: 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase]]
+
-
[[Category: Csgid]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Idp02274]]
+
-
[[Category: Lipopolysaccharide biosynthesis]]
+
-
[[Category: Magnesium]]
+

Current revision

1.95 Angstrom Resolution Crystal Structure of 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase from Yersinia pestis

PDB ID 3ij5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools