This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3iwd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:59, 6 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine==
==T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine==
-
<StructureSection load='3iwd' size='340' side='right' caption='[[3iwd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3iwd' size='340' side='right'caption='[[3iwd]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3iwd]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43589 Atcc 43589]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IWD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IWD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3iwd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IWD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IWD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=M2T:5-DEOXY-5-(DIMETHYL-LAMBDA~4~-SULFANYL)ADENOSINE'>M2T</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=M2T:5-DEOXY-5-(DIMETHYL-LAMBDA~4~-SULFANYL)ADENOSINE'>M2T</scene>, <scene name='pdbligand=PYR:PYRUVIC+ACID'>PYR</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1tlu|1tlu]], [[1tmi|1tmi]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iwd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iwd OCA], [https://pdbe.org/3iwd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iwd RCSB], [https://www.ebi.ac.uk/pdbsum/3iwd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iwd ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">speH, TM_0655 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2336 ATCC 43589])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenosylmethionine_decarboxylase Adenosylmethionine decarboxylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.50 4.1.1.50] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3iwd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iwd OCA], [http://pdbe.org/3iwd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3iwd RCSB], [http://www.ebi.ac.uk/pdbsum/3iwd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3iwd ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SPEH_THEMA SPEH_THEMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iw/3iwd_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/iw/3iwd_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 30: Line 29:
</div>
</div>
<div class="pdbe-citations 3iwd" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3iwd" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[SAM decarboxylase|SAM decarboxylase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adenosylmethionine decarboxylase]]
+
[[Category: Large Structures]]
-
[[Category: Atcc 43589]]
+
[[Category: Thermotoga maritima]]
-
[[Category: Bale, S]]
+
[[Category: Bale S]]
-
[[Category: Ealick, S E]]
+
[[Category: Ealick SE]]
-
[[Category: Kavita, B]]
+
[[Category: Kavita B]]
-
[[Category: Autocatalytic cleavage]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Polyamine biosynthesis]]
+
-
[[Category: Pyruvate]]
+
-
[[Category: S-adenosyl-l-methionine]]
+
-
[[Category: Schiff base]]
+
-
[[Category: Spermidine biosynthesis]]
+
-
[[Category: Zymogen]]
+

Current revision

T. maritima AdoMetDC complex with 5'-Deoxy-5'-dimethyl thioadenosine

PDB ID 3iwd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools