This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3n8g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:10, 6 September 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3n8g.png|left|200px]]
 
-
{{STRUCTURE_3n8g| PDB=3n8g | SCENE= }}
+
==Structure of the (SR)Ca2+-ATPase Ca2-E1-CaAMPPCP form==
 +
<StructureSection load='3n8g' size='340' side='right'caption='[[3n8g]], [[Resolution|resolution]] 2.58&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3n8g]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N8G FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.585&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACP:PHOSPHOMETHYLPHOSPHONIC+ACID+ADENYLATE+ESTER'>ACP</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n8g OCA], [https://pdbe.org/3n8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n8g RCSB], [https://www.ebi.ac.uk/pdbsum/3n8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n8g ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AT2A1_RABIT AT2A1_RABIT] This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol to the sarcoplasmic reticulum lumen. Contributes to calcium sequestration involved in muscular excitation/contraction (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The sarco(endo)plasmic reticulum Ca2+- ATPase (SERCA) is a transmembrane ion transporter belonging to the PII-type ATPases. It performs the vital task of re-sequestering cytoplasmic Ca2+ to the sarco-endoplasmic reticulum store, thereby also terminating Ca2+-induced signaling such as in muscle contraction. This article focuses on the transport pathways of Ca2+ and H+ ions across the lipid bilayer through SERCA. The ion binding sites of SERCA are accessible from either the cytoplasm or the SR/ER lumen at a time, and the Ca2+ entry and exit channels are both formed mainly by rearrangements of four N-terminal transmembrane (TM) alpha-helices. Recent improvements in the resolution of the crystal structures of rabbit SERCA1a have revealed a hydrated pathway in the Cterminal TM region leading from the ion binding sites to the cytosol. A comparison of different SERCA conformations reveals that this C-terminal pathway is exclusive to Ca2+- free E2-states, suggesting that it may play a functional role in proton release from the ion binding sites. This is in agreement with molecular dynamics (MD) simulations, mutational studies, and in striking analogy to a similar pathway recently described for the related sodium pump. We therefore suggest a model for the ion exchange mechanism in PII-ATPases including not only one, but two cytoplasmic pathways working in concert.
-
===Structure of the (SR)Ca2+-ATPase Ca2-E1-CaAMPPCP form===
+
Ion pathways in the sarcoplasmic reticulum Ca2+-ATPase.,Bublitz M, Musgaard M, Poulsen H, Thogersen L, Olesen C, Schiott B, Morth JP, Moller JV, Nissen P J Biol Chem. 2013 Feb 11. PMID:23400778<ref>PMID:23400778</ref>
-
{{ABSTRACT_PUBMED_23400778}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3n8g" style="background-color:#fffaf0;"></div>
-
[[3n8g]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N8G OCA].
+
==See Also==
==See Also==
-
*[[ATPase|ATPase]]
+
*[[ATPase 3D structures|ATPase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:015192230</ref><ref group="xtra">PMID:017335848</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Calcium-transporting ATPase]]
+
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
-
[[Category: Bublitz, M.]]
+
[[Category: Bublitz M]]
-
[[Category: Moller, J V.]]
+
[[Category: Moller JV]]
-
[[Category: Morth, J P.]]
+
[[Category: Morth JP]]
-
[[Category: Nissen, P.]]
+
[[Category: Nissen P]]
-
[[Category: Olesen, C.]]
+
[[Category: Olesen C]]
-
[[Category: Poulsen, H.]]
+
[[Category: Poulsen H]]
-
[[Category: Adenosine diphosphate]]
+
-
[[Category: Adenosine triphosphate]]
+
-
[[Category: Aluminum compound]]
+
-
[[Category: Calcium-transporting atpase]]
+
-
[[Category: Crystallization]]
+
-
[[Category: Cytosol]]
+
-
[[Category: Fast-twitch]]
+
-
[[Category: Fluoride]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Muscle fiber]]
+
-
[[Category: Phosphorylation]]
+
-
[[Category: Protein conformation]]
+
-
[[Category: Sarcoplasmic reticulum calcium-transporting atpase]]
+

Current revision

Structure of the (SR)Ca2+-ATPase Ca2-E1-CaAMPPCP form

PDB ID 3n8g

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools