This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3pbf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:50, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Surfactant Protein-A neck and carbohydrate recognition domain (NCRD) complexed with glycerol==
==Surfactant Protein-A neck and carbohydrate recognition domain (NCRD) complexed with glycerol==
-
<StructureSection load='3pbf' size='340' side='right' caption='[[3pbf]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3pbf' size='340' side='right'caption='[[3pbf]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3pbf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PBF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PBF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3pbf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PBF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PBF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1r13|1r13]], [[1r14|1r14]], [[3pak|3pak]], [[3paq|3paq]], [[3par|3par]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Sftp-1, Sftp1, Sftpa, Sftpa1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Rattus norvegicus])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pbf OCA], [https://pdbe.org/3pbf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pbf RCSB], [https://www.ebi.ac.uk/pdbsum/3pbf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pbf ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pbf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pbf RCSB], [http://www.ebi.ac.uk/pdbsum/3pbf PDBsum]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SFTPA_RAT SFTPA_RAT]] In presence of calcium ions, it binds to surfactant phospholipids and contributes to lower the surface tension at the air-liquid interface in the alveoli of the mammalian lung and is essential for normal respiration.
+
[https://www.uniprot.org/uniprot/SFTPA_RAT SFTPA_RAT] In presence of calcium ions, it binds to surfactant phospholipids and contributes to lower the surface tension at the air-liquid interface in the alveoli of the mammalian lung and is essential for normal respiration.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3pbf" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
-
[[Category: Cafarella, T M]]
+
[[Category: Cafarella TM]]
-
[[Category: Head, J]]
+
[[Category: Head J]]
-
[[Category: McCormack, F X]]
+
[[Category: McCormack FX]]
-
[[Category: Rynkiewicz, M J]]
+
[[Category: Rynkiewicz MJ]]
-
[[Category: Seaton, B A]]
+
[[Category: Seaton BA]]
-
[[Category: Shang, F]]
+
[[Category: Shang F]]
-
[[Category: Wu, H]]
+
[[Category: Wu H]]
-
[[Category: Carbohydrate binding]]
+
-
[[Category: Collectin]]
+
-
[[Category: Lectin]]
+
-
[[Category: Mannose]]
+
-
[[Category: Sugar binding protein]]
+

Current revision

Surfactant Protein-A neck and carbohydrate recognition domain (NCRD) complexed with glycerol

PDB ID 3pbf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3pbf"
Personal tools