This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3pnd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:57, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==FAD binding by ApbE protein from Salmonella enterica: a new class of FAD binding proteins==
==FAD binding by ApbE protein from Salmonella enterica: a new class of FAD binding proteins==
-
<StructureSection load='3pnd' size='340' side='right' caption='[[3pnd]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
+
<StructureSection load='3pnd' size='340' side='right'caption='[[3pnd]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3pnd]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PND OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PND FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3pnd]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PND OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PND FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2o18|2o18]], [[1vrm|1vrm]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">apbE, STM2266 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pnd OCA], [https://pdbe.org/3pnd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pnd RCSB], [https://www.ebi.ac.uk/pdbsum/3pnd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pnd ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pnd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pnd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3pnd RCSB], [http://www.ebi.ac.uk/pdbsum/3pnd PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/APBE_SALTY APBE_SALTY] Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein such as NqrB and NqrC, two subunits of the NQR complex.[UniProtKB:A5F5Y3]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3pnd" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+
[[Category: Large Structures]]
-
[[Category: Boyd, J M]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Christopherson, M R]]
+
[[Category: Boyd JM]]
-
[[Category: Downs, D M]]
+
[[Category: Christopherson MR]]
-
[[Category: Endrizzi, J A]]
+
[[Category: Downs DM]]
-
[[Category: Hamilton, T L]]
+
[[Category: Endrizzi JA]]
-
[[Category: Mulder, D W]]
+
[[Category: Hamilton TL]]
-
[[Category: Peters, J W]]
+
[[Category: Mulder DW]]
-
[[Category: Apbe]]
+
[[Category: Peters JW]]
-
[[Category: Fad]]
+
-
[[Category: Fad binding domain]]
+
-
[[Category: Flavoprotein]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Protein binding]]
+
-
[[Category: T-fold]]
+

Current revision

FAD binding by ApbE protein from Salmonella enterica: a new class of FAD binding proteins

PDB ID 3pnd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools