This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5b6y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:02, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation==
==A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation==
-
<StructureSection load='5b6y' size='340' side='right' caption='[[5b6y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='5b6y' size='340' side='right'caption='[[5b6y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5b6y]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Halsa Halsa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B6Y OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5B6Y FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5b6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum_NRC-1 Halobacterium salinarum NRC-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5B6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5B6Y FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=C14:TETRADECANE'>C14</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=L2P:2,3-DI-PHYTANYL-GLYCEROL'>L2P</scene>, <scene name='pdbligand=MYS:PENTADECANE'>MYS</scene>, <scene name='pdbligand=OCT:N-OCTANE'>OCT</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=TRD:TRIDECANE'>TRD</scene>, <scene name='pdbligand=UND:UNDECANE'>UND</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5b6w|5b6w]], [[5b6v|5b6v]], [[5b6z|5b6z]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C14:TETRADECANE'>C14</scene>, <scene name='pdbligand=D10:DECANE'>D10</scene>, <scene name='pdbligand=DD9:NONANE'>DD9</scene>, <scene name='pdbligand=HP6:HEPTANE'>HP6</scene>, <scene name='pdbligand=L2P:2,3-DI-PHYTANYL-GLYCEROL'>L2P</scene>, <scene name='pdbligand=MYS:PENTADECANE'>MYS</scene>, <scene name='pdbligand=OCT:N-OCTANE'>OCT</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene>, <scene name='pdbligand=TRD:TRIDECANE'>TRD</scene>, <scene name='pdbligand=UND:UNDECANE'>UND</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5b6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b6y OCA], [http://pdbe.org/5b6y PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5b6y RCSB], [http://www.ebi.ac.uk/pdbsum/5b6y PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5b6y ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5b6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5b6y OCA], [https://pdbe.org/5b6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5b6y RCSB], [https://www.ebi.ac.uk/pdbsum/5b6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5b6y ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
+
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5b6y" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5b6y" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Halsa]]
+
[[Category: Halobacterium salinarum NRC-1]]
-
[[Category: Arima, T]]
+
[[Category: Large Structures]]
-
[[Category: Iwata, S]]
+
[[Category: Arima T]]
-
[[Category: Nakane, T]]
+
[[Category: Iwata S]]
-
[[Category: Nango, E]]
+
[[Category: Nakane T]]
-
[[Category: Neutze, R]]
+
[[Category: Nango E]]
-
[[Category: Royant, A]]
+
[[Category: Neutze R]]
-
[[Category: Tanaka, T]]
+
[[Category: Royant A]]
-
[[Category: Bacteriorhodopsin]]
+
[[Category: Tanaka T]]
-
[[Category: Proton transport]]
+
-
[[Category: Sacla]]
+
-
[[Category: Time-resolved serial femtosecond crystallography]]
+
-
[[Category: Xfel]]
+

Current revision

A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 36.2 us after photoexcitation

PDB ID 5b6y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools