This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5ivs

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5ivs' size='340' side='right'caption='[[5ivs]], [[Resolution|resolution]] 1.46&Aring;' scene=''>
<StructureSection load='5ivs' size='340' side='right'caption='[[5ivs]], [[Resolution|resolution]] 1.46&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5ivs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/9hiv1 9hiv1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVS OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IVS FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5ivs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_1 Human immunodeficiency virus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IVS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IVS FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6EF:N-(2-{2-[(2R,5S)-5-{[(BENZYLCARBAMOYL)OXY]METHYL}MORPHOLIN-2-YL]ETHYL}PHENYL)-NALPHA-(METHOXYCARBONYL)-BETA-PHENYL-L-PHENYLALANINAMIDE'>6EF</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.46&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ivt|5ivt]], [[5ivr|5ivr]], [[5ivq|5ivq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6EF:N-(2-{2-[(2R,5S)-5-{[(BENZYLCARBAMOYL)OXY]METHYL}MORPHOLIN-2-YL]ETHYL}PHENYL)-NALPHA-(METHOXYCARBONYL)-BETA-PHENYL-L-PHENYLALANINAMIDE'>6EF</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11676 9HIV1])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ivs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ivs OCA], [https://pdbe.org/5ivs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ivs RCSB], [https://www.ebi.ac.uk/pdbsum/5ivs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ivs ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ivs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ivs OCA], [http://pdbe.org/5ivs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ivs RCSB], [http://www.ebi.ac.uk/pdbsum/5ivs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ivs ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q77VV3_9HIV1 Q77VV3_9HIV1]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Human immunodeficiency virus 1]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Su, H P]]
+
[[Category: Su HP]]
-
[[Category: Hiv]]
+
-
[[Category: Hydrolase-inhibitor complex]]
+
-
[[Category: Protease]]
+

Revision as of 10:33, 6 September 2023

Crystal Structure of HIV Protease complexed with methyl N-[(1S)-1-benzhydryl-2-[2-[2-[(2R,5S)-5-(benzylcarbamoyloxymethyl)morpholin-2-yl]ethyl]anilino]-2-oxo-ethyl]carbamate

PDB ID 5ivs

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5ivs"
Personal tools