This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5j8v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:54, 6 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of rabbit ryanodine receptor RyR1 open state activated by calcium ion==
==Structure of rabbit ryanodine receptor RyR1 open state activated by calcium ion==
-
<StructureSection load='5j8v' size='340' side='right' caption='[[5j8v]], [[Resolution|resolution]] 4.90&Aring;' scene=''>
+
<SX load='5j8v' size='340' side='right' viewer='molstar' caption='[[5j8v]], [[Resolution|resolution]] 4.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5j8v]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J8V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J8V FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5j8v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J8V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J8V FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j8v OCA], [http://pdbe.org/5j8v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j8v RCSB], [http://www.ebi.ac.uk/pdbsum/5j8v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j8v ProSAT]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 4.9&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j8v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j8v OCA], [https://pdbe.org/5j8v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j8v RCSB], [https://www.ebi.ac.uk/pdbsum/5j8v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j8v ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RYR1_RABIT RYR1_RABIT]] Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis (By similarity).<ref>PMID:10388749</ref> <ref>PMID:22036948</ref>
+
[https://www.uniprot.org/uniprot/RYR1_RABIT RYR1_RABIT] Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules. Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm. Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis (By similarity).<ref>PMID:10388749</ref> <ref>PMID:22036948</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
</div>
</div>
<div class="pdbe-citations 5j8v" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5j8v" style="background-color:#fffaf0;"></div>
- 
-
==See Also==
 
-
*[[Ryanodine receptor|Ryanodine receptor]]
 
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
 +
[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
-
[[Category: Sun, F]]
+
[[Category: Sun F]]
-
[[Category: Wang, X]]
+
[[Category: Wang X]]
-
[[Category: Wei, R]]
+
[[Category: Wei R]]
-
[[Category: Yin, C]]
+
[[Category: Yin C]]
-
[[Category: Activated by calcium ion]]
+
-
[[Category: Endoplasmic reticula]]
+
-
[[Category: Intracellular calcium ion channel]]
+
-
[[Category: Skeletal muscle]]
+
-
[[Category: Transport protein]]
+

Current revision

Structure of rabbit ryanodine receptor RyR1 open state activated by calcium ion

5j8v, resolution 4.90Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools