This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1vmj

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1vmj" [edit=sysop:move=sysop])
Current revision (14:53, 20 September 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1vmj.png|left|200px]]
 
-
{{STRUCTURE_1vmj| PDB=1vmj | SCENE= }}
+
==CRYSTAL STRUCTURE OF A PUTATIVE THIAMIN PHOSPHATE SYNTHASE (TM0723) FROM THERMOTOGA MARITIMA MSB8 AT 1.52 A RESOLUTION==
-
 
+
<StructureSection load='1vmj' size='340' side='right'caption='[[1vmj]], [[Resolution|resolution]] 1.52&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF A PUTATIVE THIAMIN PHOSPHATE SYNTHASE (TM0723) FROM THERMOTOGA MARITIMA MSB8 AT 1.52 A RESOLUTION===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1vmj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima_MSB8 Thermotoga maritima MSB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VMJ FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.52&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
[[1vmj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VMJ OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vmj OCA], [https://pdbe.org/1vmj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vmj RCSB], [https://www.ebi.ac.uk/pdbsum/1vmj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vmj ProSAT], [https://www.topsan.org/Proteins/JCSG/1vmj TOPSAN]</span></td></tr>
-
[[Category: Thermotoga maritima]]
+
</table>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
== Function ==
-
[[Category: Jcsg]]
+
[https://www.uniprot.org/uniprot/Q9WZI2_THEMA Q9WZI2_THEMA]
-
[[Category: Joint center for structural genomic]]
+
== Evolutionary Conservation ==
-
[[Category: Protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Psi]]
+
Check<jmol>
-
[[Category: Putative thiamin phosphate synthase]]
+
<jmolCheckbox>
-
[[Category: Structural genomic]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vm/1vmj_consurf.spt"</scriptWhenChecked>
-
[[Category: Transferase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vmj ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Thermotoga maritima MSB8]]

Current revision

CRYSTAL STRUCTURE OF A PUTATIVE THIAMIN PHOSPHATE SYNTHASE (TM0723) FROM THERMOTOGA MARITIMA MSB8 AT 1.52 A RESOLUTION

PDB ID 1vmj

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools