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2frp
From Proteopedia
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==Bacteriophage HK97 Expansion Intermediate IV== | ==Bacteriophage HK97 Expansion Intermediate IV== | ||
| - | < | + | <SX load='2frp' size='340' side='right' viewer='molstar' caption='[[2frp]], [[Resolution|resolution]] 7.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2frp]] is a 7 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2frp]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FRP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FRP FirstGlance]. <br> |
| - | </td></tr><tr><td class="sblockLbl"><b>[[ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 7.5Å</td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2frp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2frp OCA], [https://pdbe.org/2frp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2frp RCSB], [https://www.ebi.ac.uk/pdbsum/2frp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2frp ProSAT]</span></td></tr> | |
| - | <tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | </table> |
| - | <table> | + | == Function == |
| + | [https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fr/2frp_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fr/2frp_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2frp ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2frp" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
| - | </ | + | </SX> |
| - | [[Category: | + | [[Category: Escherichia virus HK97]] |
| - | [[Category: Cheng | + | [[Category: Large Structures]] |
| - | [[Category: Conway | + | [[Category: Cheng N]] |
| - | [[Category: Duda | + | [[Category: Conway JF]] |
| - | [[Category: Firek | + | [[Category: Duda RL]] |
| - | [[Category: Gan | + | [[Category: Firek BA]] |
| - | [[Category: Hendrix | + | [[Category: Gan L]] |
| - | [[Category: Johnson | + | [[Category: Hendrix RW]] |
| - | [[Category: Lander | + | [[Category: Johnson JE]] |
| - | [[Category: Liljas | + | [[Category: Lander G]] |
| - | [[Category: Speir | + | [[Category: Liljas L]] |
| - | + | [[Category: Speir JA]] | |
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Current revision
Bacteriophage HK97 Expansion Intermediate IV
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Categories: Escherichia virus HK97 | Large Structures | Cheng N | Conway JF | Duda RL | Firek BA | Gan L | Hendrix RW | Johnson JE | Lander G | Liljas L | Speir JA
