This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4i49

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:14, 20 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of ngNAGS bound with bisubstrate analog CoA-NAG==
==Structure of ngNAGS bound with bisubstrate analog CoA-NAG==
-
<StructureSection load='4i49' size='340' side='right' caption='[[4i49]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
+
<StructureSection load='4i49' size='340' side='right'caption='[[4i49]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4i49]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_sk-93-1035 Neisseria gonorrhoeae sk-93-1035]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I49 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4i49]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_gonorrhoeae_SK-93-1035 Neisseria gonorrhoeae SK-93-1035]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I49 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I49 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1C4:(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14,20-TRIOXO-2,4,6-TRIOXA-18-THIA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~-DIPHOSPHAICOSAN-20-YL}AMINO)PENTANEDIOIC+ACID+(NON-PREFERRED+NAME)'>1C4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.75&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3d2m|3d2m]], [[3b8g|3b8g]], [[2r2v|2r2v]], [[3d2p|3d2p]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1C4:(2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14,20-TRIOXO-2,4,6-TRIOXA-18-THIA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~-DIPHOSPHAICOSAN-20-YL}AMINO)PENTANEDIOIC+ACID+(NON-PREFERRED+NAME)'>1C4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">argA, NGLG_00316 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=528360 Neisseria gonorrhoeae SK-93-1035])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i49 OCA], [https://pdbe.org/4i49 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i49 RCSB], [https://www.ebi.ac.uk/pdbsum/4i49 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i49 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Amino-acid_N-acetyltransferase Amino-acid N-acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.1 2.3.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i49 OCA], [http://pdbe.org/4i49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i49 RCSB], [http://www.ebi.ac.uk/pdbsum/4i49 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i49 ProSAT]</span></td></tr>
+
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 23: Line 21:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Amino-acid N-acetyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Neisseria gonorrhoeae sk-93-1035]]
+
[[Category: Neisseria gonorrhoeae SK-93-1035]]
-
[[Category: Allewell, N M]]
+
[[Category: Allewell NM]]
-
[[Category: Shi, D]]
+
[[Category: Shi D]]
-
[[Category: Tuchman, M]]
+
[[Category: Tuchman M]]
-
[[Category: Zhao, G]]
+
[[Category: Zhao G]]
-
[[Category: Protein-bisubstrate analog complex]]
+
-
[[Category: Synthase]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of ngNAGS bound with bisubstrate analog CoA-NAG

PDB ID 4i49

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools