This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4kdp
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| + | |||
==TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins== | ==TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins== | ||
| - | <StructureSection load='4kdp' size='340' side='right' caption='[[4kdp]], [[Resolution|resolution]] 3.60Å' scene=''> | + | <StructureSection load='4kdp' size='340' side='right'caption='[[4kdp]], [[Resolution|resolution]] 3.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4kdp]] is a 9 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[4kdp]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_epidermidis_ATCC_12228 Staphylococcus epidermidis ATCC 12228]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KDP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KDP FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4kdp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4kdp OCA], [https://pdbe.org/4kdp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4kdp RCSB], [https://www.ebi.ac.uk/pdbsum/4kdp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4kdp ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A0H2VJZ8_STAES A0A0H2VJZ8_STAES] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 15: | Line 18: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 4kdp" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Staphylococcus epidermidis ATCC 12228]] |
| - | [[Category: | + | [[Category: Chang YM]] |
| - | [[Category: | + | [[Category: Chen CK-M]] |
| - | [[Category: | + | [[Category: Wang AH-J]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism of the MarR family proteins
| |||||||||||
