4l4x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:11, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
{{STRUCTURE_4l4x| PDB=4l4x | SCENE= }}
 
-
===An A2-type ketoreductase from a modular polyketide synthase===
 
-
{{ABSTRACT_PUBMED_23755878}}
 
-
==About this Structure==
+
==An A2-type ketoreductase from a modular polyketide synthase==
-
[[4l4x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ochroconis_lascauxensis Ochroconis lascauxensis]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4di7 4di7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L4X OCA].
+
<StructureSection load='4l4x' size='340' side='right'caption='[[4l4x]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4l4x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_nodosus Streptomyces nodosus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4di7 4di7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4L4X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4L4X FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4l4x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4l4x OCA], [https://pdbe.org/4l4x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4l4x RCSB], [https://www.ebi.ac.uk/pdbsum/4l4x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4l4x ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q93NX9_9ACTN Q93NX9_9ACTN]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Modular polyketide synthase ketoreductases often set two stereocenters when reducing intermediates in the biosynthesis of a complex polyketide. Here we report the 2.55-A resolution structure of an A2-type ketoreductase from the 11th module of the amphotericin polyketide synthase that sets a combination of l-alpha-methyl and l-beta-hydroxyl stereochemistries and represents the final catalytically competent ketoreductase type to be structurally elucidated. Through structure-guided mutagenesis a double mutant of an A1-type ketoreductase was generated that functions as an A2-type ketoreductase on a diketide substrate analogue, setting an alpha-alkyl substituent in an l-orientation rather than in the d-orientation set by the unmutated ketoreductase. When the activity of the double mutant was examined in the context of an engineered triketide lactone synthase, the anticipated triketide lactone was not produced even though the ketoreductase-containing module still reduced the diketide substrate analogue as expected. These findings suggest that re-engineered ketoreductases may be catalytically outcompeted within engineered polyketide synthase assembly lines.
-
==Reference==
+
Structural Studies of an A2-Type Modular Polyketide Synthase Ketoreductase Reveal Features Controlling alpha-Substituent Stereochemistry.,Zheng J, Piasecki SK, Keatinge-Clay AT ACS Chem Biol. 2013 Sep 20;8(9):1964-71. doi: 10.1021/cb400161g. Epub 2013 Jun, 24. PMID:23755878<ref>PMID:23755878</ref>
-
<ref group="xtra">PMID:023755878</ref><references group="xtra"/><references/>
+
 
-
[[Category: Ochroconis lascauxensis]]
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Keatinge-Clay, A T.]]
+
</div>
-
[[Category: Zheng, J.]]
+
<div class="pdbe-citations 4l4x" style="background-color:#fffaf0;"></div>
-
[[Category: Ketoreductase]]
+
== References ==
-
[[Category: Oxidoreductase]]
+
<references/>
-
[[Category: Rossmann fold]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Streptomyces nodosus]]
 +
[[Category: Keatinge-Clay AT]]
 +
[[Category: Zheng J]]

Current revision

An A2-type ketoreductase from a modular polyketide synthase

PDB ID 4l4x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools