This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4mb6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:35, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis.==
==Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis.==
-
<StructureSection load='4mb6' size='340' side='right' caption='[[4mb6]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
+
<StructureSection load='4mb6' size='340' side='right'caption='[[4mb6]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4mb6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis_ip_32953 Yersinia pseudotuberculosis ip 32953]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MB6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MB6 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4mb6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pseudotuberculosis_IP_32953 Yersinia pseudotuberculosis IP 32953]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MB6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MB6 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">apt, YPTB0991 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=273123 Yersinia pseudotuberculosis IP 32953])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Adenine_phosphoribosyltransferase Adenine phosphoribosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.7 2.4.2.7] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mb6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mb6 OCA], [https://pdbe.org/4mb6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mb6 RCSB], [https://www.ebi.ac.uk/pdbsum/4mb6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mb6 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mb6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mb6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4mb6 RCSB], [http://www.ebi.ac.uk/pdbsum/4mb6 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/APT_YERPS APT_YERPS] Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis (By similarity).
==See Also==
==See Also==
-
*[[Phosphoribosyltransferase|Phosphoribosyltransferase]]
+
*[[Phosphoribosyltransferase 3D structures|Phosphoribosyltransferase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adenine phosphoribosyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Yersinia pseudotuberculosis ip 32953]]
+
[[Category: Yersinia pseudotuberculosis IP 32953]]
-
[[Category: Almo, S C]]
+
[[Category: Almo SC]]
-
[[Category: Hegde, R P]]
+
[[Category: Hegde RP]]
-
[[Category: Kim, J]]
+
[[Category: Kim J]]
-
[[Category: Structural genomic]]
+
[[Category: Pavithra GC]]
-
[[Category: Pavithra, G C]]
+
[[Category: Ramagopal UA]]
-
[[Category: Ramagopal, U A]]
+
-
[[Category: Aprt]]
+
-
[[Category: Nysgrc]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of adenine phosphoribosyltransferase from Yersinia pseudotuberculosis.

PDB ID 4mb6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools