This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4mkk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:38, 20 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of C115A mutant L-methionine gamma-lyase from Citrobacter freundii modified by allicine==
==Crystal structure of C115A mutant L-methionine gamma-lyase from Citrobacter freundii modified by allicine==
-
<StructureSection load='4mkk' size='340' side='right' caption='[[4mkk]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='4mkk' size='340' side='right'caption='[[4mkk]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4mkk]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MKK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MKK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4mkk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MKK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=C1S:3-(PROP-2-EN-1-YLDISULFANYL)-L-ALANINE'>C1S</scene>, <scene name='pdbligand=LLP:2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)'>LLP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C1S:3-(PROP-2-EN-1-YLDISULFANYL)-L-ALANINE'>C1S</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2rfv|2rfv]], [[4mkj|4mkj]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mkk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mkk OCA], [https://pdbe.org/4mkk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mkk RCSB], [https://www.ebi.ac.uk/pdbsum/4mkk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mkk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_gamma-lyase Methionine gamma-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.4.1.11 4.4.1.11] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mkk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mkk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4mkk RCSB], [http://www.ebi.ac.uk/pdbsum/4mkk PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q84AR1_CITFR Q84AR1_CITFR]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4mkk" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Methionine gamma-lyase 3D structures|Methionine gamma-lyase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Methionine gamma-lyase]]
+
[[Category: Citrobacter freundii]]
-
[[Category: Demidkina, T V]]
+
[[Category: Large Structures]]
-
[[Category: Morozova, E A]]
+
[[Category: Demidkina TV]]
-
[[Category: Nikulin, A D]]
+
[[Category: Morozova EA]]
-
[[Category: Revtovich, S V]]
+
[[Category: Nikulin AD]]
-
[[Category: Zakomirdina, L N]]
+
[[Category: Revtovich SV]]
-
[[Category: Allicine]]
+
[[Category: Zakomirdina LN]]
-
[[Category: Aminotransferase class-v]]
+
-
[[Category: Lyase]]
+
-
[[Category: Plp-dependent enzyme]]
+
-
[[Category: Pyridoxal-5'-phosphate]]
+

Current revision

Crystal structure of C115A mutant L-methionine gamma-lyase from Citrobacter freundii modified by allicine

PDB ID 4mkk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4mkk"
Personal tools