This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ng8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:56, 20 September 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Dialyzed HEW lysozyme batch crystallized in 1.9 M CsCl and collected at 100 K.==
==Dialyzed HEW lysozyme batch crystallized in 1.9 M CsCl and collected at 100 K.==
-
<StructureSection load='4ng8' size='340' side='right' caption='[[4ng8]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
+
<StructureSection load='4ng8' size='340' side='right'caption='[[4ng8]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ng8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NG8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NG8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ng8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NG8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NG8 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.09&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4neb|4neb]], [[4nfv|4nfv]], [[4ng1|4ng1]], [[4ngi|4ngi]], [[4ngj|4ngj]], [[4ngk|4ngk]], [[4ngl|4ngl]], [[4ngo|4ngo]], [[4ngv|4ngv]], [[4ngz|4ngz]], [[4ngw|4ngw]], [[4ngy|4ngy]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ng8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ng8 OCA], [https://pdbe.org/4ng8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ng8 RCSB], [https://www.ebi.ac.uk/pdbsum/4ng8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ng8 ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ng8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ng8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ng8 RCSB], [http://www.ebi.ac.uk/pdbsum/4ng8 PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
-
The influence of salt nature and concentration on tetragonal lysozyme chloride crystal solubility is presented for a set of mono-, di- and trivalent cations (Cs(+), Rb(+), Mn(2+), Co(2+) and Yb(3+)). The results show that cations have as strong an effect on protein solubility as anions and that they present their own particular effects as co-ions. Indeed, after decreasing at low ionic strength, lysozyme solubility increases with high concentration of polyvalent cations, probably due to co-ion binding and therefore the concomitant increase of the net charge of the protein-salt complex. These new results are discussed in order to progress in the understanding of the crystallisation process at the atomic level.
+
The adsorption of Rb(+), Cs(+), Mn(2+), Co(2+) and Yb(3+) onto the positively charged hen egg-white lysozyme (HEWL) has been investigated by solving 13 X-ray structures of HEWL crystallized with their chlorides and by applying electrospray ionization mass spectrometry (ESI-MS) first to dissolved protein crystals and then to the protein in buffered salt solutions. The number of bound cations follows the order Cs(+) &lt; Mn(2+) approximately Co(2+) &lt; Yb(3+) at 293 K. HEWL binds less Rb(+) (qtot = 0.7) than Cs(+) (qtot = 3.9) at 100 K. Crystal flash-cooling drastically increases the binding of Cs(+), but poorly affects that of Yb(3+), suggesting different interactions. The addition of glycerol increases the number of bound Yb(3+) cations, but only slightly increases that of Rb(+). HEWL titrations with the same chlorides, followed by ESI-MS analysis, show that only about 10% of HEWL binds Cs(+) and about 40% binds 1-2 Yb(3+) cations, while the highest binding reaches 60-70% for protein binding 1-3 Mn(2+) or Co(2+) cations. The binding sites identified by X-ray crystallography show that the monovalent Rb(+) and Cs(+) preferentially bind to carbonyl groups, whereas the multivalent Mn(2+), Co(2+) and Yb(3+) interact with carboxylic groups. This work elucidates the basis of the effect of the Hofmeister cation series on protein solubility.
-
Strong and specific effects of cations on lysozyme chloride solubility.,Benas P, Legrand L, Ries-Kautt M Acta Crystallogr D Biol Crystallogr. 2002 Oct;58(Pt 10 Pt 1):1582-7. Epub 2002, Sep 26. PMID:12351866<ref>PMID:12351866</ref>
+
Weak protein-cationic co-ion interactions addressed by X-ray crystallography and mass spectrometry.,Benas P, Auzeil N, Legrand L, Brachet F, Regazzetti A, Ries-Kautt M Acta Crystallogr D Biol Crystallogr. 2014 Aug 1;70(Pt 8):2217-31. doi:, 10.1107/S1399004714011304. Epub 2014 Jul 25. PMID:25084340<ref>PMID:25084340</ref>
-
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4ng8" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Lysozyme 3D structures|Lysozyme 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 21: Line 27:
</StructureSection>
</StructureSection>
[[Category: Gallus gallus]]
[[Category: Gallus gallus]]
-
[[Category: Lysozyme]]
+
[[Category: Large Structures]]
-
[[Category: Benas, P.]]
+
[[Category: Benas P]]
-
[[Category: Legrand, L.]]
+
[[Category: Legrand L]]
-
[[Category: Ries-Kautt, M.]]
+
[[Category: Ries-Kautt M]]
-
[[Category: Hofmeister series]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Protein cation interaction]]
+
-
[[Category: Si-mass spectrometry]]
+

Current revision

Dialyzed HEW lysozyme batch crystallized in 1.9 M CsCl and collected at 100 K.

PDB ID 4ng8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools