This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4od7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:10, 20 September 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Complex structure of Proteus mirablis DsbA (C30S) with a non-covalently bound peptide PWATCDS==
==Complex structure of Proteus mirablis DsbA (C30S) with a non-covalently bound peptide PWATCDS==
-
<StructureSection load='4od7' size='340' side='right' caption='[[4od7]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='4od7' size='340' side='right'caption='[[4od7]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4od7]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OD7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4OD7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4od7]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Proteus_mirabilis_HI4320 Proteus mirabilis HI4320]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4OD7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4OD7 FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene><br>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.597&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-
<tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4oce|4oce]], [[4ocf|4ocf]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4od7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4od7 OCA], [https://pdbe.org/4od7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4od7 RCSB], [https://www.ebi.ac.uk/pdbsum/4od7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4od7 ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4od7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4od7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4od7 RCSB], [http://www.ebi.ac.uk/pdbsum/4od7 PDBsum]</span></td></tr>
+
</table>
-
<table>
+
== Function ==
 +
[https://www.uniprot.org/uniprot/B4EZ68_PROMH B4EZ68_PROMH]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4od7" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Kurth, F.]]
+
[[Category: Large Structures]]
-
[[Category: Martin, J L.]]
+
[[Category: Proteus mirabilis HI4320]]
-
[[Category: Premkumar, L.]]
+
[[Category: Kurth F]]
-
[[Category: Disulfide oxidoreductase]]
+
[[Category: Martin JL]]
-
[[Category: Dithiol exchange]]
+
[[Category: Premkumar L]]
-
[[Category: Dsba]]
+
-
[[Category: Dsbb]]
+
-
[[Category: Oxidative folding protein]]
+
-
[[Category: Oxidoreductase-peptide complex]]
+
-
[[Category: Periplasmic]]
+
-
[[Category: Thioredoxin]]
+
-
[[Category: Virulence factor maturation protein]]
+

Current revision

Complex structure of Proteus mirablis DsbA (C30S) with a non-covalently bound peptide PWATCDS

PDB ID 4od7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools