This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4r23
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with dicloxacillin== | ==Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with dicloxacillin== | ||
| - | <StructureSection load='4r23' size='340' side='right' caption='[[4r23]], [[Resolution|resolution]] 1.84Å' scene=''> | + | <StructureSection load='4r23' size='340' side='right'caption='[[4r23]], [[Resolution|resolution]] 1.84Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[4r23]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R23 OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[4r23]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Lancefieldella_parvulum_DSM_20469 Lancefieldella parvulum DSM 20469]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4R23 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4R23 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DXU:(3R,4R,5R)-3-(2,6-DICHLOROPHENYL)-N-{(1R)-1-[(2R,4S)-4-(DIHYDROXYMETHYL)-5,5-DIMETHYL-1,3-THIAZOLIDIN-2-YL]-2-OXOETHYL}-5-METHYL-1,2-OXAZOLIDINE-4-CARBOXAMIDE'>DXU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DXU:(3R,4R,5R)-3-(2,6-DICHLOROPHENYL)-N-{(1R)-1-[(2R,4S)-4-(DIHYDROXYMETHYL)-5,5-DIMETHYL-1,3-THIAZOLIDIN-2-YL]-2-OXOETHYL}-5-METHYL-1,2-OXAZOLIDINE-4-CARBOXAMIDE'>DXU</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=P4G:1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE'>P4G</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4r23 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4r23 OCA], [https://pdbe.org/4r23 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4r23 RCSB], [https://www.ebi.ac.uk/pdbsum/4r23 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4r23 ProSAT]</span></td></tr> | |
| - | + | ||
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/C8W8H7_LANP1 C8W8H7_LANP1] | ||
==See Also== | ==See Also== | ||
| - | *[[Glycosyltransferase|Glycosyltransferase]] | + | *[[Glycosyltransferase 3D structures|Glycosyltransferase 3D structures]] |
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Lancefieldella parvulum DSM 20469]] |
| - | [[Category: Anderson | + | [[Category: Large Structures]] |
| - | [[Category: Clancy | + | [[Category: Anderson WF]] |
| - | [[Category: Filippova | + | [[Category: Clancy S]] |
| - | [[Category: Joachimiak | + | [[Category: Filippova EV]] |
| - | [[Category: Kiryukhina | + | [[Category: Joachimiak A]] |
| - | + | [[Category: Kiryukhina O]] | |
| - | [[Category: Minasov | + | [[Category: Minasov G]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of a putative peptidoglycan glycosyltransferase from Atopobium parvulum in complex with dicloxacillin
| |||||||||||
